Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0012 + 27041475-27042476                                         30   1.9  
09_02_0384 - 8294914-8297817                                           29   2.4  
05_05_0173 + 22956927-22958615                                         29   3.2  
08_02_0894 + 22346027-22347925                                         28   5.6  
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    28   5.6  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   7.5  
11_08_0026 + 27752519-27755441,27755538-27755923                       27   9.9  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    27   9.9  

>05_07_0012 + 27041475-27042476
          Length = 333

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  KLIIYNYYAKYNEVHDVYGESYHH 100
           K+I+YN   K+ EV D + ++Y H
Sbjct: 210 KMIVYNIATKFREVSDYFRQNYQH 233


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 554 HISYHTKFIVPPSDSALLGLNTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKE 375
           H+      I PP++S +  +           +M+  KR K+ C QP+ + E+ +    +E
Sbjct: 259 HVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPDEAWELFKYSATEE 318

Query: 374 NIC 366
            IC
Sbjct: 319 TIC 321


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 336 NHRVDLLQHFTDVIVDARRFAGAEPMGRLLMESP 235
           + R+DLLQHF D+    R  +    + R++  SP
Sbjct: 436 SERIDLLQHFVDLASTERLASAVSDLRRMVRPSP 469


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 268 STGETTGIDDN-VRKVLEQIDAVVPVSVRVQTGRQIFSLNNFER---EISQDMLGCLQII 435
           S G ++GI  + +R+     +A    + RVQ+G  +      E     IS+ ++   +  
Sbjct: 525 SGGFSSGISKSALRERFRSFNAAFEEAHRVQSGWCVPDTQLREELRISISEKLVPAYRSF 584

Query: 436 LGRFEHFMRNGK 471
           LGRF H + NGK
Sbjct: 585 LGRFRHHIENGK 596


>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/63 (36%), Positives = 30/63 (47%)
 Frame = -1

Query: 551 ISYHTKFIVPPSDSALLGLNTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKEN 372
           +S  TK IVP S  A L  + +A+C  F +     K  K   K P    +   SK+F E 
Sbjct: 253 VSCSTKNIVPASSVAQLMESVMAVCRIFGYRNNLLKMEK--GKVPKAHWDAYASKVFCE- 309

Query: 371 ICR 363
           ICR
Sbjct: 310 ICR 312


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 459  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 289
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 846  HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 459  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 289
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 850  HVLRMARHRNLIKILNTCTNLDFRALILEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 908


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 518 SDSALLGLNTLAMCSSFPFLMKCSKRP 438
           SD     LN  ++CSS+  +M C+K+P
Sbjct: 222 SDQLNSRLNFFSLCSSYRDIMHCNKKP 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,398
Number of Sequences: 37544
Number of extensions: 387758
Number of successful extensions: 1063
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)