Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)        31   0.62 
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    29   4.4  
SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)                28   5.8  
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)                28   7.6  

>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
          Length = 1006

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 575 VSMHYSVHISYHTK-FIVPPSDSALLGLNTLAMCSSFPFLMKCSKRPKIICKQPNMS*EI 399
           VS  Y   ++  T+ FIVPP     LGL      SS P + +         KQP ++  +
Sbjct: 205 VSTFYDTLVNASTQDFIVPPETRPYLGLYKAD--SSLPIIRRMDVTINREDKQPKLAIAV 262

Query: 398 SRSKLFKENICRPV 357
           + + LF  N  RP+
Sbjct: 263 NHANLFFLNYTRPL 276


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 539 CDNLCAQNNASKPCPXNWC 595
           CD LC QN   KPCP   C
Sbjct: 59  CDQLCLQNKDQKPCPRLKC 77


>SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 463 NGKLLHIANVFNPNSALSD 519
           NGK L I + FNPNSA SD
Sbjct: 319 NGKTLAIESQFNPNSAASD 337


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 227 IDAGDSIKSLPIGSAPAKRR--ASTITSVKCWSKSTRWFPSACAF 355
           ++ GD++  LP G     R   AST +S +  +KS  W PS  A+
Sbjct: 738 LEEGDTVPDLPKGLKSKNRMSTASTTSSKRLSNKSLEWDPSYNAY 782


>SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)
          Length = 659

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 279 FAGAEPMGRLLMESPASIILTASSKVQLPIFKRRIAVTSRSMHDISFTYD 130
           + G EP G  L +   S I     +  LP+F+ ++      ++ I +T D
Sbjct: 101 YPGTEPAGLFLAKVDVSEIPMDELQASLPVFESQLLRDGNGLYSIDYTRD 150


>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 295 RRCPSF--RRC*TNGKAFDGIARVYHLDRFVKG 203
           R+CPS+  + C TNG+ FD + R+      +KG
Sbjct: 328 RKCPSYVDQVCATNGETFDNLCRLKKHVCHIKG 360


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 500 GLNTLAMCSSFP-FLMKCSKRPKIICKQPN 414
           G+ ++A C   P  LM C+K  +I+C  PN
Sbjct: 263 GILSIAWCPQDPDLLMSCAKDNRILCWNPN 292


>SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +2

Query: 35  IIYNYYAKYNEVHDVYGESYH--HHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTF 208
           I + + + Y  +H ++  +Y   HH  +  YL+ S     +   R +T       GS T 
Sbjct: 165 IHHMFISTYQRIHHMFTSTYQQIHHMFISTYLNRSITCSPAHTNRSITCSSAHTNGSITC 224

Query: 209 DEA 217
             A
Sbjct: 225 SPA 227


>SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)
          Length = 286

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 295 RRCPSF--RRC*TNGKAFDGIARVYHLDRFVKG 203
           R+CPS+  + C TNG+ FD + R+      +KG
Sbjct: 62  RKCPSYVDQVCATNGETFDNLCRLKKHVCHIKG 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,298,701
Number of Sequences: 59808
Number of extensions: 468597
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)