Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting prote...    35   0.29 
AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein.        35   0.29 
L27476-1|AAA61300.1| 1116|Homo sapiens X104 protein.                   31   3.6  
BC027592-1|AAH27592.1| 1190|Homo sapiens tight junction protein ...    31   3.6  
AL358113-3|CAM13389.1| 1043|Homo sapiens tight junction protein ...    31   3.6  
AL358113-2|CAH70868.1| 1190|Homo sapiens tight junction protein ...    31   3.6  
AL358113-1|CAH70867.1|  993|Homo sapiens tight junction protein ...    31   3.6  
AF489824-1|AAM28524.1|  993|Homo sapiens tight junction protein ...    31   3.6  
AF177533-4|AAD56219.2| 1020|Homo sapiens tight junction protein ...    31   3.6  
AF177533-3|AAC02527.2| 1167|Homo sapiens tight junction protein ...    31   3.6  
AF177533-2|AAD56218.2| 1043|Homo sapiens tight junction protein ...    31   3.6  
AF177533-1|AAD20387.2| 1190|Homo sapiens tight junction protein ...    31   3.6  
U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.           31   4.7  
BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.          31   4.7  
AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.         31   4.7  
AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.         31   4.7  
AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb...    31   4.7  

>BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting protein
           protein.
          Length = 1000

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 121 PIRIVRKRYVVHRAGRDRYAAFEDRQLHL*RSGQDDRRGRFHQKPSHWFST--GETTGID 294
           P+  +R R ++      R  + +  + H  +S  D +  R    P HW S+  G+ TG+D
Sbjct: 455 PVCDLRFRSIIECVDDFRVVSLKLLRTHFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVD 514

Query: 295 DNVRKV 312
            N++K+
Sbjct: 515 RNIKKI 520


>AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein.
          Length = 1000

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 121 PIRIVRKRYVVHRAGRDRYAAFEDRQLHL*RSGQDDRRGRFHQKPSHWFST--GETTGID 294
           P+  +R R ++      R  + +  + H  +S  D +  R    P HW S+  G+ TG+D
Sbjct: 455 PVCDLRFRSIIECVDDFRVVSLKLLRTHFKKSLDDGKVSRVEFLPVHWHSSLGGDATGVD 514

Query: 295 DNVRKV 312
            N++K+
Sbjct: 515 RNIKKI 520


>L27476-1|AAA61300.1| 1116|Homo sapiens X104 protein.
          Length = 1116

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>BC027592-1|AAH27592.1| 1190|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1190

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AL358113-3|CAM13389.1| 1043|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1043

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AL358113-2|CAH70868.1| 1190|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1190

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AL358113-1|CAH70867.1|  993|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AF489824-1|AAM28524.1|  993|Homo sapiens tight junction protein 2
           protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AF177533-4|AAD56219.2| 1020|Homo sapiens tight junction protein
           ZO-2 isoform C protein.
          Length = 1020

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 647 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 692


>AF177533-3|AAC02527.2| 1167|Homo sapiens tight junction protein
           ZO-2 isoform C protein.
          Length = 1167

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 647 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 692


>AF177533-2|AAD56218.2| 1043|Homo sapiens tight junction protein
           ZO-2 isoform A protein.
          Length = 1043

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>AF177533-1|AAD20387.2| 1190|Homo sapiens tight junction protein
           ZO-2 isoform A protein.
          Length = 1190

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 SGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVR 351
           S Q+ +R     +   W   G+ +G+  N+RK  E + AVV VS +
Sbjct: 670 SVQNAQRDNAGDRADFWRMRGQRSGVKKNLRKSREDLTAVVSVSTK 715


>U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 295
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175


>BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 295
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175


>AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 295
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175


>AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 295
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175


>AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb
           variant protein.
          Length = 514

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 411 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 295
           VL ++  K+ Q E+    L AHADG + VD+  L++ T V+
Sbjct: 171 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 211


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,284,028
Number of Sequences: 237096
Number of extensions: 1934705
Number of successful extensions: 4394
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4380
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)