Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    28   5.0  
AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    27   8.8  
AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   8.8  

>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 20  LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 190
           L A  + Y+   KY E   VH V+ E Y    I+ E++++  +  +     DV A ++++
Sbjct: 420 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 479

Query: 191 -IGSCTFDEAVKMIDAGD 241
            +  C  +  +K+ D  +
Sbjct: 480 GVRKCCKNVVLKLSDGSE 497


>AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical
           protein C51G7.5 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 20  LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 190
           L A  + Y+   KY E   VH V+ E Y    I+ E++++  +  +     DV A ++++
Sbjct: 152 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 211

Query: 191 -IGSCTFDEAVKMIDAGD 241
            +  C  +  +K+ D  +
Sbjct: 212 GVRKCCKNVVLKLSDGSE 229


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 402 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD 289
           N   K+++   L +G++ + D NH  +L Q   DVI +
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITE 540


>AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7b protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 545 YHTKFIVPPSDSALLGLNTLAMCSSFPFLMKCSKRP 438
           Y+T+  +PP     +G NTL   + FP  M C  +P
Sbjct: 41  YYTRISLPPQSPTFVGFNTLQQ-AVFP--MNCDGKP 73


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 572 SMHYSVHISYHTKFIVPPSDSALLGLNTLA 483
           S HY   I+Y T  ++PPSD   +   TLA
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLA 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,415
Number of Sequences: 27780
Number of extensions: 341205
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)