Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    31   0.51 
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    31   0.67 
At3g21410.1 68416.m02702 F-box family protein (FBW1) contains si...    29   3.6  
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea...    29   3.6  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    28   4.7  
At4g17030.1 68417.m02569 expansin-related identical to SWISS-PRO...    28   4.7  
At3g19120.1 68416.m02428 expressed protein                             28   4.7  
At2g21160.1 68415.m02510 translocon-associated protein alpha (TR...    28   6.2  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   6.2  

>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -3

Query: 462  SHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGN-HRVDLLQHFTDVIVDA 286
            SHE+  A +++     HV   FS   V  +   + +  H D N    + +Q   D+ +D+
Sbjct: 1228 SHEILAAKRDHAARPLHVRNPFSPPEVSSDSATTSIKGHPDSNISGSEAIQRSDDITIDS 1287

Query: 285  RRFAGAEPMGRLLMESPASIILTASSK 205
                     G LLM++      +A+SK
Sbjct: 1288 TVTDKRRGKGPLLMDTDQKTDDSATSK 1314


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 38  IYNYYAKYNEVHDVYGESYHH-HRIVQEYLSESYVNDMSCIERDVTAMRRLKI 193
           ++ +YA+  + H   G+ Y   +++V E     YV D SCI +D++   + K+
Sbjct: 377 VHIFYAE-GKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKL 428


>At3g21410.1 68416.m02702 F-box family protein (FBW1) contains
           similarity to F-box domain IPR:001810;
          Length = 410

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 286 PSFRRC*TNGKAFDGIAR-VYHLDRFVKGATADLQTPHSG 170
           PSFR C   G  +DG++R  Y + RFV G     +  ++G
Sbjct: 155 PSFRGCSCYGIGYDGLSRDSYKILRFVNGVFTKNEYANTG 194


>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 353

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +1

Query: 178 AAFEDRQLHL*RSGQDDRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQ 357
           A   D  LHL R   D    R  +  +H  S      IDD  R V    D  + ++  V+
Sbjct: 23  AGLIDGHLHLYRYDSDSSLVRERKVRAHKESCRAVRFIDDGQRIVTASADCSI-LATDVE 81

Query: 358 TGRQIFSLNN 387
           TG Q+  L N
Sbjct: 82  TGAQVAHLEN 91


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
            repair and meiosis protein Rad9 [Coprinus cinereus]
            GI:1353390, SP|Q09725 Sister chromatid cohesion protein
            mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +1

Query: 226  DRRGRFHQKPSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQTGR-QIFSLNNFE-RE 399
            D   R  ++P HW S G  T ID N     +  D     S +V  G+  +  + + +  E
Sbjct: 1527 DLNTRIQEEPRHWNSYGHATLIDLNGSVYQDSRDQF--TSYQVHNGKADVHKMTSSDPPE 1584

Query: 400  ISQDMLGCLQIILGRFEHFM 459
            +S D L  +Q++   F   M
Sbjct: 1585 LSTDDLQKIQVVFMAFSPVM 1604


>At4g17030.1 68417.m02569 expansin-related identical to
           SWISS-PROT:O23547 expansin-related protein 1 precursor
           (At-EXPR1)[Arabidopsis thaliana]; related to expansins,
           http://www.bio.psu.edu/expansins/
          Length = 250

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 50  YAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIE---RDVTAMRRLK 190
           YA YN V+ ++ +SY+ H +    L    VND+  +E    D    RR++
Sbjct: 146 YAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMR 195


>At3g19120.1 68416.m02428 expressed protein
          Length = 446

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 521 PSDSAL-LGLNTLAM-CSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKENICRPV*TR 348
           P+D A+ + L+ LA  CS+     + S  P +I K  NM   +  +KL+ E I  PV  R
Sbjct: 147 PADYAVAMVLSRLAHGCSAKTLASRYSLDPYLISKITNMVTRLLATKLYPEFIKIPVGKR 206

Query: 347 TLTGTT 330
            L  TT
Sbjct: 207 RLIETT 212


>At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP
           alpha) family protein contains Pfam profile: PF03896
           translocon-associated protein (TRAP), alpha subunit
          Length = 258

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 602 NEGTNSXGTVSMHYSVHISYHTKFIVPPSDSALLGLNTLAMCSS----FPFLMKCSK 444
           NEG    G + +  SVH+ Y  K +V   +  +L LN  ++ +S    FP++   S+
Sbjct: 92  NEGKTRVGVMGIRASVHLPYDHKLLV--QNLTMLRLNNASIPTSLQATFPYIFAVSQ 146


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 536 KFIVPPSDSALLGLNTLAMCSSFPFL--MKCSKRPKIICKQPN 414
           K I   S + LLGL T+ + +SFP L    C+ +  + C  PN
Sbjct: 124 KTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,933
Number of Sequences: 28952
Number of extensions: 305167
Number of successful extensions: 850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)