Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060231.seq
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   5.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 281 CDEEMTWPTPCCRPEPGTL 225
           CDE +  P  CC+  PG L
Sbjct: 94  CDEPVHRPGRCCKTCPGDL 112


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 205 WCLEGGRSVPGSGRQHGVGQVISSSQTDGI 294
           +C E G ++PG      V Q+I+ +  D I
Sbjct: 174 FCSEDGTTIPGDLPSKDVPQMITITFDDAI 203


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 670  QSSTSVAIVERNCPTSSLVIPNWAPS 593
            QS+TSV+      P S+   P W P+
Sbjct: 1347 QSTTSVSTTTSWNPGSTTNYPEWQPT 1372


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 516 YAFEDTLWAGLSD 554
           Y ++DTLW G  +
Sbjct: 315 YLYDDTLWVGFDN 327


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 321 SWYSSREAGARHQQTMRLWFP 383
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 321 SWYSSREAGARHQQTMRLWFP 383
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 288 RNLHATSRGAQSWYSSR 338
           RNL+ T R  + W+ +R
Sbjct: 278 RNLNLTERQVKIWFQNR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,887
Number of Sequences: 336
Number of extensions: 3214
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)