Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060231.seq
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 59 4e-09
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 58 5e-09
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 51 1e-06
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 49 4e-06
03_02_0167 - 6088818-6089870 31 0.83
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 31 1.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.5
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315... 30 1.9
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.3
12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442 29 4.4
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 4.4
09_02_0415 - 8835344-8835467,8835543-8835946 29 4.4
10_05_0080 - 8907628-8908182 28 7.7
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474... 28 7.7
07_01_0474 + 3579653-3579821,3580407-3580744 28 7.7
06_01_0443 - 3138815-3139210 28 7.7
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +1
Query: 256 VGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKIS 435
+G V+S++ G R AAL AG+P P +N++C SG ++++ +AQ I G +
Sbjct: 66 MGNVLSANL--GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVV 123
Query: 436 VAGGVENMSQAPFAVRNVRFGT 501
VAGG+E+MS AP V R G+
Sbjct: 124 VAGGMESMSNAPKYVAAARRGS 145
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 104 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 253
+ + IVG RTP G G + AT+L ++A AL+ A V PA V +
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEV 64
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 435 SSGGSREHVASALRGQKREVRHGSGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 614
S + ++VA+A RG + G + + L GL D Y PMGM AE Q I
Sbjct: 130 SMSNAPKYVAAARRGSR------FGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSI 183
Query: 615 TRDE 626
+R+E
Sbjct: 184 SREE 187
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = +1
Query: 259 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISV 438
G V+S++ G R AAL AGIP +N++C SG ++ + +AQ IL G I V
Sbjct: 61 GNVLSANL--GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVV 118
Query: 439 AGGVENMSQAPFAVRNVRFGTALAPTT 519
AGG+E+MS AP + R G+ T
Sbjct: 119 AGGMESMSNAPKYIAEARKGSRFGHDT 145
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 104 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 253
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V +
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEV 58
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 256 VGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKIS 435
VG V++ I R AA AG P P++ +NR C SG Q++ N A +I G I
Sbjct: 101 VGTVLAPGSQRAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIG 159
Query: 436 VAGGVENMS 462
+A G+E+M+
Sbjct: 160 IAAGLESMT 168
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 561 CGLPMGMTAEKLGAQFGITRDEVGQ 635
C LPMG+T+E + +FGITR E Q
Sbjct: 191 CLLPMGLTSENVAKRFGITRMEQDQ 215
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/84 (34%), Positives = 41/84 (48%)
Frame = +1
Query: 211 LEGGRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 390
L+ + PG VG V+ I R AA AG+P+ PV +NR C SG Q++
Sbjct: 84 LDNTKINPGEIGDIVVGTVLGPGSQRAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAV 142
Query: 391 VNSAQDILTGAAKISVAGGVENMS 462
+ A I G I + G+E+MS
Sbjct: 143 ADVAAAIKAGFYDIGIGAGLESMS 166
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 561 CGLPMGMTAEKLGAQFGITRDEVGQ 635
C LPMG+T+E + ++G+TR E Q
Sbjct: 189 CLLPMGITSENVAHRYGVTRQEQDQ 213
>03_02_0167 - 6088818-6089870
Length = 350
Score = 31.1 bits (67), Expect = 0.83
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 261 PSHLFITN*RNLHATSRGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSS 440
P L ++ R ATS+G + SS + GAR ++T+RL+ + + R QDL
Sbjct: 233 PPRLDMSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLE 291
Query: 441 GGSREHVASALRGQKREVRHGS 506
G +A +R + R GS
Sbjct: 292 SGGGLPLAVTVRARSRYRMVGS 313
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 325 GIPQEKPVLGIN-RLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVRFGT 501
G+P E P + R C S S A++ A++ G SQA +AV N +
Sbjct: 244 GVPGEAPAIAAEIRDCASASSSASGHAKETAAELARLDAMGDAAKGSQARWAVSNAKTWL 303
Query: 502 ALAPT 516
+ A T
Sbjct: 304 SAAMT 308
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 321 SWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSRE 455
SWYSS AG ++ F I R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>12_01_0399 +
3152219-3152721,3152995-3153127,3155013-3155097,
3155321-3155586
Length = 328
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 169 HIRDRTADDS--HGWCLEGGRSVPGSGRQHGVGQVISSSQTDGIYTP--RHAALKAGIP 333
H+R + D + G+ L+GG G G G G S DG+ +P +AL G+P
Sbjct: 85 HMRSLSLDTAFFEGFSLQGGGGGGGGGGSGGSGGHKRSGSMDGVNSPFEGESALSGGLP 143
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 301 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 417
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442
Length = 130
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 293 IPSVCDEEMTWPTPCCRPEPGTLRPPSRHQPWLS 192
+P D T P R G LRPP+ PW+S
Sbjct: 94 VPESHDNGFTQPPVSGRGTIGFLRPPTSRAPWIS 127
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 453 EHVASALRGQKREVRHGSGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVG 632
+H+ S LRG + + ED + DSY + +T+ L A+ I D +G
Sbjct: 344 DHLLSDLRGPAKAGWRTAAVIRELEDEIEIQNGDSYRFQQVALTSLTLQAKLSIIHDLLG 403
Query: 633 QLRSTIAT 656
++ +T+ +
Sbjct: 404 KVHATVVS 411
>09_02_0415 - 8835344-8835467,8835543-8835946
Length = 175
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 372 LWFPIDREQRSGHFDRRSQDLSSGGSREH---VASALRGQKREVRHGSGTNYAFEDTLWA 542
LWF ++ R G + ++ GG ++ VA ++ E R GSG+ F +WA
Sbjct: 104 LWFSMEESSREGGWWPPARADGDGGRKKMRGGVAQCQFSRRMEKRRGSGSWVGFCGAIWA 163
>10_05_0080 - 8907628-8908182
Length = 184
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 137 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDS-MAWAKSSLHHKLTESTRHVTR 313
P G F G FR + + + + + + SP+ + S AW ++ S RH R
Sbjct: 43 PTGCFAGCFRPSPTSSRSSPPSCNSQADRPASPSLIRSPSAWIRAR-GQSFASSARHARR 101
Query: 314 RS 319
RS
Sbjct: 102 RS 103
>09_04_0493 -
18046553-18046990,18047061-18047180,18047290-18047478,
18047596-18047739,18048673-18048900,18049659-18049838,
18050304-18050399,18051096-18051262,18051356-18051773,
18052335-18052517,18053846-18053953,18054053-18054246,
18054503-18054662
Length = 874
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 453 EHVASALRGQKREVRHGSGTNYAFEDTLWA-GLSDSYCG 566
EH+A+AL + GS +++ ED+LWA L+ SY G
Sbjct: 819 EHLATALLNLRWCATMGSTISWSPEDSLWARRLASSYDG 857
>07_01_0474 + 3579653-3579821,3580407-3580744
Length = 168
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 178 DRTADDSHGWCLEGGRSVPGSGRQHGVGQVISSSQTDGIYT 300
D T D HGW LE + G+ +G + + T G +T
Sbjct: 26 DYTVGDGHGWTLEYPSTNWADGKSFQIGDKLVFTYTKGKHT 66
>06_01_0443 - 3138815-3139210
Length = 131
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 148 LRRSLPQHIRDRTADDSHGWCLEGGRSVPGSGRQHGVGQVISSSQT 285
+RRSL Q RD ADD G GG + +G + VG V T
Sbjct: 77 VRRSLDQIRRDLDADDDVG----GGENCSATGDEEDVGSVRQQPNT 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,502,160
Number of Sequences: 37544
Number of extensions: 454938
Number of successful extensions: 1698
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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