Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060231.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)                 41   8e-04
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            31   0.64 
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 30   2.0  
SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)                     29   2.6  
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 33/72 (45%), Positives = 45/72 (62%)
 Frame = +1

Query: 256 VGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKIS 435
           +GQV+++ Q  G    R AA+ AGIP   P  G+N LCGSG +++    Q +  G + I 
Sbjct: 59  LGQVLTAGQGQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIV 116

Query: 436 VAGGVENMSQAP 471
           VAGG E+MSQAP
Sbjct: 117 VAGGQESMSQAP 128



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 104 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 253
           + + I  A RTP G+  G   +  A EL +I    AL  A +SP  V  +
Sbjct: 8   RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEV 57



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 543 GLSDSYCGLPMGMTAEKLGAQFGITRDE 626
           GL DS+    MG+TAE +  Q+ ++R+E
Sbjct: 152 GLMDSFNNYHMGITAENVAKQWEVSREE 179


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 26/65 (40%), Positives = 37/65 (56%)
 Frame = +1

Query: 211 LEGGRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 390
           +E G+  P +      G V+  +  D  Y  RH  +K+ +P   P L +NRLCGSGFQSI
Sbjct: 738 MESGKVDPATVDSVIFGNVLQCAN-DAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSI 796

Query: 391 VNSAQ 405
           ++ AQ
Sbjct: 797 ISGAQ 801



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +3

Query: 525 EDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVGQ 635
           EDTLW GL+D   GLPMG+TAE L  ++ ITR+E  Q
Sbjct: 803 EDTLWQGLTDMLPGLPMGITAENLAEKYNITREECDQ 839



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +2

Query: 125 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMAWAK-SSLHHKLTESTR 301
           AKRT FG FGG  ++ +AT L   A+V A++   V PA VDS+ +       +      R
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCANDAAYVAR 768

Query: 302 HVTRRSKL 325
           H+  +SK+
Sbjct: 769 HIGIKSKV 776


>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
          Length = 271

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 309 RGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFD-RRSQDLSSGGSREHVASALRGQK 485
           RGAQ+W S +E     ++     +  +   RSG+F+ R S D SSG  R H AS  R + 
Sbjct: 28  RGAQNWSSPQERSWTSEE-----YGGEESYRSGNFEARESSDASSGSKRRHRASPHRHKY 82

Query: 486 REVRHGSGTNYAFED 530
            E RH   T Y   D
Sbjct: 83  HE-RHSEETGYNSSD 96


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
 Frame = +1

Query: 241  GRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGF-QSIVNSAQDILT 417
            G   G+ Q ++   T G+       L AG+   +   G+ +  G+GF Q + +     L 
Sbjct: 2003 GLAPGITQGLAPGVTQGLAPGITQGLGAGVTH-RLAPGVTQGLGAGFTQGLASGVTQGLE 2061

Query: 418  GAAKISVAGGVENMSQAPFAVRNVRFGTALAPTTPSKTPSGPDSRTHT 561
                  +  GV+         R  R     AP+ P++ P  PD+ T T
Sbjct: 2062 VGVTQGLGAGVKCPDTLTATPRVCRHANRYAPSVPTRQPLRPDTLTAT 2109


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 328 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGA 423
           +P   P   IN++C SG +SI+ +AQ ++ G+
Sbjct: 26  LPISTPCTTINKVCASGMKSIMAAAQSLMCGS 57


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 25/87 (28%), Positives = 40/87 (45%)
 Frame = +2

Query: 245 DSMAWAKSSLHHKLTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAQ 424
           D+ A A+ S+ HK     R  T  S  +   +++   S  +     NRS T+       Q
Sbjct: 277 DAQAQAQESVKHKRKRKNRSNTSASARIGQTQAQAQESVKHKRKRKNRSNTSASAR-IGQ 335

Query: 425 PRSQ*RGE*RTCRKRPSRSET*GSARL 505
            ++Q +   +  RKR +RS T  SAR+
Sbjct: 336 TQAQAQESVKHKRKRKNRSNTSASARI 362


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 477 GQKREVRHGSGTNYAFEDTLWAGLSDSYCGLPMGM 581
           G  ++V  GSG +Y   D  + G S+ +CG+  G+
Sbjct: 747 GCNQDVHVGSGNDYGGSDNYYCGSSNCFCGVDDGI 781


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 533 PLGRTLGLILRTPHGHDRREARSPVRNHQRRSW-TITLYNRNRSGR 667
           P GRT+G +++  H  + +       NHQR  W ++   N  R G+
Sbjct: 750 PKGRTVGSLVKANHQREGQWGSLVKANHQRGQWGSLVKANHQRGGQ 795


>SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)
          Length = 441

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 386 DWKPEPHSLLMPSTGFS*GIPALSAA*RG--V*IPSVCDEEMTWPTPCCRPEPGTLRPPS 213
           D +PEPH++    TG+    PA +   R     + +V    +  P P  RP+    RP +
Sbjct: 56  DRRPEPHAIRR-RTGYKL-YPARTEVARSDNSIVTTVAQHYINVPIPGKRPDQNAFRPQT 113

Query: 212 RHQPWLSS 189
            ++PW  S
Sbjct: 114 DNKPWPKS 121


>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +1

Query: 235 GSGRQHGVGQVISSSQ----TDGIYTPRHAALKAGIPQEKPVLGINRLCGS 375
           G GR     Q + SS      D    P HA  K   P+E  + G+ R  GS
Sbjct: 5   GRGRGRSTAQTVDSSPPRPGADSAKAPIHADQKTASPKESDLTGLKRALGS 55


>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +1

Query: 271 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 450
           +++  D     R AA ++  P E+ V+  +    S    I+NS ++       + V   V
Sbjct: 186 NNNNNDAEEVDREAATRSPSPNEQQVIQEDNKRQSRLAWIINSGKNTTNTLLPLQVVSDV 245

Query: 451 ENMSQAPFAVRNVRFGTALAP 513
           +N  Q    V N+R G  + P
Sbjct: 246 QNSEQ---VVYNLRRGRTIRP 263


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 427 KISVAGGVENMSQAPFAVRNVRFGTALAPTTPSKTPSGPDSRTHTA 564
           +I+    V     A FA ++++  TA+A  T SKT + P SRT T+
Sbjct: 111 RITAKQNVPPSRSAQFAGQSIQI-TAIATKTKSKTTTTPTSRTPTS 155


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 201 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 73
           VA+  S+V+ V + TPPK+P   L   T+  PL  A +++ +T
Sbjct: 66  VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 264  LAHAMLST*AGDTPASFKAPTVAIVCSSVADVLRKTPPKVPNGVLL 127
            L++ +  T     P   + P V ++ +S A ++   PP +PNGVLL
Sbjct: 2243 LSNIISGTTGEAAPDGIRPPNVTVL-NSTAVMVSWQPPALPNGVLL 2287


>SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 178 DRTADDSHGWCLEGGRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQE 339
           D    D H    +G  S P + R  G+     +++ DG+ +  HA    G+P E
Sbjct: 83  DGMPSDPHATRDDGMPSDPHATRDDGMSSDSHATRGDGVSSDSHATRGDGVPSE 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,468,871
Number of Sequences: 59808
Number of extensions: 461535
Number of successful extensions: 1384
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)