Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060231.seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 107 5e-24
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 62 3e-10
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 47 1e-05
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 29 3.9
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 28 5.2
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 107 bits (258), Expect = 5e-24
Identities = 58/136 (42%), Positives = 75/136 (55%)
Frame = +1
Query: 259 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISV 438
G V++SS+ DGIY RH LK+G+PQ L +NRLCGSGFQ++VN+AQ I G + I +
Sbjct: 56 GNVVASSR-DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVL 114
Query: 439 AGGVENMSQAPFAVRNVRFGTALAPTTPSKTPSGPDSRTHTADXXXXXXXXXXXXXXXXX 618
AGG ENMS PFAVR++RFGTAL + A
Sbjct: 115 AGGTENMSMVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKLGAQYKVT 174
Query: 619 XTKLDNYALQSQQKWK 666
+ D +AL+SQ WK
Sbjct: 175 RQEADEFALRSQTLWK 190
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 486 REVRHGS--GTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVGQ 635
R++R G+ G Y FED LW LSD Y L MG TAEKLGAQ+ +TR E +
Sbjct: 129 RDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKLGAQYKVTRQEADE 180
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +2
Query: 104 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD 247
K +FIVGAKRT FGTFGG + SAT+L +A+ ALK A V VD
Sbjct: 4 KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVD 51
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/91 (38%), Positives = 53/91 (58%)
Frame = +1
Query: 211 LEGGRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 390
LE G P S ++ +GQV ++ G R AAL AG+ V +N++C SG ++I
Sbjct: 58 LERGAVKPSSIQEVFLGQVCQANA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAI 115
Query: 391 VNSAQDILTGAAKISVAGGVENMSQAPFAVR 483
+ +AQ I TG ++ GG+E+MSQ PF V+
Sbjct: 116 ILAAQQIQTGHQDFAIGGGMESMSQVPFYVQ 146
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 98 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 253
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + +
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEV 71
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 426 QDLSSGGSREHVASA-LRGQKREVRHGSGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGA 602
QD + GG E ++ Q+ E+ +G + + GL+D+Y + MG EK
Sbjct: 127 QDFAIGGGMESMSQVPFYVQRGEIPYGGFQ--VIDGIVKDGLTDAYDKVHMGNCGEKTSK 184
Query: 603 QFGITRDE 626
+ GITR +
Sbjct: 185 EMGITRKD 192
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 54.4 bits (125), Expect = 7e-08
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = +1
Query: 211 LEGGRSVPGSGRQHGV--GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQ 384
LE G P S ++ V GQV ++ G + R AAL AG+ V +N+ SG +
Sbjct: 136 LERGAVKPSSIQEANVFLGQVCHANA--GQASARQAALGAGLDLSVAVTTVNKGWSSGMK 193
Query: 385 SIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 489
+I+ +AQ I TG +++ GG+E+MSQ PF + V
Sbjct: 194 AIILAAQQIQTGHQDLAIGGGMESMSQVPFFLARV 228
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 98 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQV 244
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ +
Sbjct: 98 SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSI 146
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 98 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 253
S K +FI+ RTP G + G F N A EL T+A A++ +GV+P +++ +
Sbjct: 2 SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEV 53
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 304 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAV 480
R +L AG+P + +N++C S +++V +A +I G + G ENMSQ PF V
Sbjct: 69 RQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTENMSQVPFYV 127
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 543 GLSDSYCGLPMGMTAEKLGAQFGITRDE 626
GL D PMG+ AEK +GITR+E
Sbjct: 147 GLEDIKEKGPMGLCAEKTVKDYGITREE 174
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 44.8 bits (101), Expect = 6e-05
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +1
Query: 259 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISV 438
G VI +T I R AAL AG+P + P + C S ++ + TG A +
Sbjct: 76 GTVIQECKTSNI--AREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAII 133
Query: 439 AGGVENMSQAPFAV-RNVR---FGTALAPTTPSKTPSG 540
AGGVE +S P RN R G A PSK G
Sbjct: 134 AGGVELLSDVPIRYNRNARKAMLGMNKAKDVPSKLKIG 171
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 86 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD 247
+ ++ I +V A RTPF G VF++ A +LQ A +++ + Q+D
Sbjct: 18 VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLD 71
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Frame = +1
Query: 220 GRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLC-GSGFQSIVN 396
GRS + G I+ D + R LKAG+P EK + +C SG ++
Sbjct: 19 GRSAAVIFAKEGAQVTITGRSADRLEETRLQILKAGVPAEKINAVVADVCEASGQDEVIR 78
Query: 397 SAQ------DILTGAAKISVAGGVENMSQA 468
+ DIL A + G N QA
Sbjct: 79 TTLAKFGKIDILVNNAGALLTDGTSNTDQA 108
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 266 TWPTPCCRPEPGTLRPPSRHQP 201
TWP C RPEP + P + P
Sbjct: 74 TWPASCRRPEPRSSSQPKENPP 95
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 266 TWPTPCCRPEPGTLRPPSRHQP 201
TWP C RPEP + P + P
Sbjct: 47 TWPASCRRPEPRSSSQPKENLP 68
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Frame = +1
Query: 220 GRSVPGSGRQHGVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLC-GSGFQSIVN 396
GRS + G I+ D + + LKAG+P EK + + SG I+N
Sbjct: 19 GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIIN 78
Query: 397 SAQ------DILTGAAKISVAGGVENMSQ 465
+ DIL A ++A G N Q
Sbjct: 79 TTLAKFGKIDILVNNAGANLADGTANTDQ 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,500
Number of Sequences: 27780
Number of extensions: 326788
Number of successful extensions: 1136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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