Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060230.seq
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   1.7  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   5.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   5.1  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 643 SVKRESLPFGPVGPIIVIGPLAHILLMYPGSVLLKKFSKLI 521
           S+K + +P GP      +G ++ + L   GSV+LK + +++
Sbjct: 326 SMKPKEVP-GPCCVPTQLGQMSMLYLGSDGSVILKNYKEMV 365


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 231 LLISYVLSSGTSFK 190
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 231 LLISYVLSSGTSFK 190
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,901
Number of Sequences: 336
Number of extensions: 3505
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)