Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060230.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.0  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   1.8  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.1  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   4.1  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   5.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   9.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   9.5  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 298 VNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTE 393
           +N + + L+ ++NNF G   K     SC DTE
Sbjct: 212 LNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTE 243


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = +1

Query: 220 RD*QLARCKSFNIRNTRTGTRRLFEYVNNFQQFLNTIRNN--FNGPCAKHDMGSSCEDTE 393
           R+  L++   F  R+  TG    F+  +  +   NT+      +       +   C +TE
Sbjct: 174 REAGLSQSNGFEARSHGTGFDEYFDKFSQRKTSSNTLSQLPVLDNQVYLDTVKEICTETE 233

Query: 394 EATEKQAVQQTLDGHDWVLE-SNDFCIFVKPFILKKHY 504
           + T+     Q+ + H W  E  N+F +    F  K+H+
Sbjct: 234 QHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHF 271


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 345 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 461
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLR 197


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 345 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 461
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = +3

Query: 507 SIQKYINFENFFKSTDPGYINKMCASGPITIIGPTGPKGRLSLLTDG 647
           S+ KY +++   ++ +PG +  +       ++ PTG   + +  T+G
Sbjct: 421 SLYKYTSYKIRLETPEPGLLRSLMTPLQGNMVAPTGVHSQFNTKTEG 467


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 286 LFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEAT 402
           L E++ + ++   +  ++FN   A  DM  S E TEEAT
Sbjct: 557 LDEFIQSGEEVEWSNFSHFNAESALADMNDSVEVTEEAT 595


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 319 LNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLESN 459
           L + + N +G  AKHD+     D   + + Q++Q   D     ++SN
Sbjct: 29  LTSRKYNTHGLGAKHDIADQWWDNVFSAQLQSIQVNTDNGKVAVQSN 75


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 167 IDNILQFFLKDVPEDKTYEINNLQDANHLT--LETREQEHADCLSTLTIFNSS 319
           +D IL+  +   P +    + NLQD+N  T  L        DC+++L  +N++
Sbjct: 342 LDCILEKLISIQPFENVVRLVNLQDSNGDTSLLIAARNGAMDCVNSLLSYNAN 394


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 452 SNTQSWPSNVC*TACFSVASSVSSQDEPMSCFAHGPLKL 336
           S  +  PSN    +  S  S VS    P SC  H P ++
Sbjct: 145 SEKEEIPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQI 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,430
Number of Sequences: 5004
Number of extensions: 55924
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)