Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060230.seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0091 + 19967390-19969825                                         29   3.2  
01_06_0390 - 28938485-28938751,28939924-28941282                       27   9.9  

>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -1

Query: 634 RESLPFGPVGPIIVIGPLAHILLMYPGSVLLKKFSKLIYFCML 506
           ++SL  GP    +V+G +A + +++  ++L KK  ++ YFC+L
Sbjct: 748 KQSLGMGPFSLGVVLGFIAGLWVVFC-TLLFKKSWRVAYFCLL 789


>01_06_0390 - 28938485-28938751,28939924-28941282
          Length = 541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 451 ESNDFCIFVKPFILKKHYEAYKNILILKIFSRAPTL-DTLTKC 576
           ES   C+ + PFIL+       ++ + +I S +PTL D + KC
Sbjct: 428 ESAQICLLL-PFILQSRAHRLHSVELPRIVSCSPTLEDCIVKC 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,941
Number of Sequences: 37544
Number of extensions: 306407
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)