Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060230.seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    29   3.8  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    29   3.8  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    29   3.8  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    28   5.0  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 197 DVPEDKTYEINN-LQDANHLTLETREQEHADCLSTLTIFNSS 319
           +  +++  EINN LQDA     ET++QE  D     T+  S+
Sbjct: 258 EATKEEMNEINNILQDAEQRVAETKKQEEHDAAELRTLMKST 299


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 QKYINFENFFKSTDPGYINKMCASGPITIIGPTGP 617
           Q+    EN F     G I    A  P+TI+G TGP
Sbjct: 456 QRMAAMENLFGGALCGVIYHFFAGQPLTIVGSTGP 490


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 QKYINFENFFKSTDPGYINKMCASGPITIIGPTGP 617
           Q+    EN F     G I    A  P+TI+G TGP
Sbjct: 498 QRMAAMENLFGGALCGVIYHFFAGQPLTIVGSTGP 532


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 QKYINFENFFKSTDPGYINKMCASGPITIIGPTGP 617
           Q+    EN F     G I    A  P+TI+G TGP
Sbjct: 456 QRMAAMENLFGGALCGVIYHFFAGQPLTIVGSTGP 490


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 QKYINFENFFKSTDPGYINKMCASGPITIIGPTGP 617
           Q+    EN F     G I    A  P+TI+G TGP
Sbjct: 456 QRMAAMENLFGGALWGVIYHFFAGQPLTIVGSTGP 490


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 463 FCIFVKPFILKKHYEAYKNILILKIFSRAPTLDTLTKCVQ 582
           + + + P I     E Y    IL+  +R+ TLD   KC Q
Sbjct: 64  YLLLLSPAIASAGLEEYDEPFILQFINRSQTLDLSLKCKQ 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,380
Number of Sequences: 27780
Number of extensions: 322116
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)