Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060230.seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05750.1 68416.m00646 expressed protein                             29   2.7  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   3.6  
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    28   4.7  
At5g58280.1 68418.m07296 transcriptional factor B3 family protei...    28   6.2  
At3g19470.1 68416.m02468 F-box family protein contains F-box dom...    28   6.2  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    27   8.2  
At3g22770.1 68416.m02871 F-box family protein-related contains T...    27   8.2  

>At3g05750.1 68416.m00646 expressed protein
          Length = 798

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 EYVNNFQQFLNT-IRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLE 453
           E VN+F    N  I  + +   +++D   + E+TE  +E  A+ +  +GHDW LE
Sbjct: 592 EEVNSFSTAENLQISCSTSFSSSRNDYHHNIEETE-LSESVALSEAEEGHDWELE 645


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 108 NHHPFLHRIKTLIKDFNNTLLFGAYIQI 25
           +HH  LH IK LI++ + TLLF   + I
Sbjct: 2   DHHRRLHTIKILIRNSSTTLLFFKIVPI 29


>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 253 NIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGP 351
           +I +   GT+ L+ Y    ++ LN I+N +N P
Sbjct: 379 HISSESDGTKILWSYPEGLRKLLNYIKNKYNNP 411


>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 273

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 408 TGSSTNIRRPR----LGVGK*RFLHFCKTFHFEEAL*SIQKYINFENFFKSTDPGYINKM 575
           TG ++N+RR R          R LH CK   +EE + + +    F+   KS  P ++  M
Sbjct: 72  TGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSM 131

Query: 576 CAS 584
             S
Sbjct: 132 VRS 134


>At3g19470.1 68416.m02468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 382

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 175 VVNHFGYRVYIFRVNLFNNFDQKSPSIFT*NKNANKR 65
           VV    +RVY+ RVNL NN  + S S  + + +  KR
Sbjct: 59  VVLMMNFRVYLMRVNLQNNVVESSSSSSSSSSSCIKR 95


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 GTRRLFEYVNNFQQFLNTIRNNFNGP 351
           GT+ L+ Y    ++ LN I+N +N P
Sbjct: 386 GTKILWSYPEGLRKILNYIKNKYNNP 411


>At3g22770.1 68416.m02871 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 327

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 175 VVNHFGYRVYIFRVNLFNNFDQKSPS 98
           VV    +RVY+ RVNL NN  + S S
Sbjct: 2   VVMMMNFRVYLMRVNLDNNVVESSSS 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,553
Number of Sequences: 28952
Number of extensions: 272586
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)