Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060229.seq
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2TGX5 Cluster: Flp-18 GPCR receptor; n=1; Meloidogyne ...    34   2.8  
UniRef50_O97278 Cluster: Transporter, putative; n=2; Plasmodium|...    33   8.4  

>UniRef50_Q2TGX5 Cluster: Flp-18 GPCR receptor; n=1; Meloidogyne
           incognita|Rep: Flp-18 GPCR receptor - Meloidogyne
           incognita (Southern root-knot nematode)
          Length = 494

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 449 ICFNVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYLMILFI 571
           +CF+   L  ISVDRF +I+F  +  FS       +++ F+
Sbjct: 131 LCFSTFTLAAISVDRFLLILFPTRKAFSHTQALFIILVAFL 171


>UniRef50_O97278 Cluster: Transporter, putative; n=2;
           Plasmodium|Rep: Transporter, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 3133

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 431 CFYLNIICFNVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYLMILF 568
           C ++  ICF++N   +I+++ F   +   K  +   W+  Y +ILF
Sbjct: 587 CLFIVNICFDINKERKINIENFLCCLKINKYYYYYSWLLFYFIILF 632


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,632,589
Number of Sequences: 1657284
Number of extensions: 9155571
Number of successful extensions: 17419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17419
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)