Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060229.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                29   3.5  
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 29   3.5  
SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)                   29   3.5  
SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +2

Query: 419 YFIWCFYLNIICFNVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYLMILFI 571
           +F+W      IC ++  L  +++ R  +I+   K +    ++FI++++++I
Sbjct: 103 WFVWPTMTVTICLSIFTLTSMAIHRRKVILNPFKPEIKHRYVFIWIVVIWI 153


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -1

Query: 173 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSDRMLV 3
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D  +V
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTEDGKIV 498


>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 FYLNIICFNVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYLMILF 568
           FY   +  +V  LC ++ DRF  I+  LK +       +++++LF
Sbjct: 112 FYDMAVIASVFNLCALTYDRFLAIVHPLKYQLVMTRTRVFILLLF 156


>SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)
          Length = 536

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 425 IWCFYLNIICFNVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYL 556
           IW + L +    + G+ + S+  FC+ I+ +K   ++ W   Y+
Sbjct: 331 IWIYSLLLAVLPLVGVADYSITLFCVPIYPVKSIPAQFWFSFYV 374


>SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 458 NVNGLCEISVDRFCIIIFSLKXKFSRIWIFIYLMILF 568
           N+ G+  I V   CII F L    S    F+YLM+ F
Sbjct: 130 NILGITFIFVLLSCIIAFELMTSLSAYQQFLYLMVTF 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,563
Number of Sequences: 59808
Number of extensions: 314070
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)