Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060229.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.071
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 IWCFYLNIICF-NVNGLCEISVDRFCIIIFSLKXKFSR 535
           +W  +  + C  ++  LC ISVDRFC I   LK    R
Sbjct: 116 LWVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKR 153


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 16  SEVSIHLSYISCPVRSLTYIH 78
           S ++I + YISCP  S+ + H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 432 VDRLCLIVFTL 442


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 500 VDRLCLIVFTL 510


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           VDR C+I+F+L
Sbjct: 500 VDRLCLIVFTL 510


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 485 VDRFCIIIFSL 517
           +DR C+IIF+L
Sbjct: 526 IDRMCLIIFTL 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,851
Number of Sequences: 438
Number of extensions: 3235
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)