Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060228.seq
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     28   4.9  
Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 367  WNSI-MCDPHYCNSRYLLRLAVSYSTVS*IRRKFNTNNCLPRIMXSLIRYSARALT 531
            W+S+  C P Y +S+Y      S  T++  ++  N +N LP+ +  +  Y  R LT
Sbjct: 1492 WSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKKSSNDSNLLPKSIPEV--YLTRLLT 1545


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 367  WNSI-MCDPHYCNSRYLLRLAVSYSTVS*IRRKFNTNNCLPRIMXSLIRYSARALT 531
            W+S+  C P Y +S+Y      S  T++  ++  N +N LP+ +  +  Y  R LT
Sbjct: 1494 WSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKKSSNDSNLLPKSIPEV--YLTRLLT 1547


>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 301 NVNIFILIQQNGSK-NSFTLEGIWNSIMCDPHY 396
           ++ IF    +NGS   SF++E  WN +   PH+
Sbjct: 193 DIKIFKTEMKNGSNVESFSVEFYWNPLSHQPHF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,524
Number of Sequences: 27780
Number of extensions: 223880
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)