Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060227.seq
         (492 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y5K8 Cluster: Vacuolar ATP synthase subunit D; n=81; ...    87   2e-16
UniRef50_Q9XGM1 Cluster: Vacuolar ATP synthase subunit D; n=9; E...    39   0.053
UniRef50_Q1HPT6 Cluster: Vacuolar ATP synthase subunit D; n=1; B...    35   1.1  

>UniRef50_Q9Y5K8 Cluster: Vacuolar ATP synthase subunit D; n=81;
           Eukaryota|Rep: Vacuolar ATP synthase subunit D - Homo
           sapiens (Human)
          Length = 247

 Score = 87.0 bits (206), Expect = 2e-16
 Identities = 42/78 (53%), Positives = 53/78 (67%)
 Frame = +3

Query: 249 GXXMXEAAFSLAEAKXTTGXFNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFESXHXGSDT 428
           G  M EAAFSLAEAK T G F+  V+QNV KA +++  ++    GVTLP+FE  H G+D+
Sbjct: 59  GEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDS 118

Query: 429 YELAXLAPXXXQLAKLKK 482
           YEL  LA    QLAKLK+
Sbjct: 119 YELTGLARGGEQLAKLKR 136



 Score = 52.0 bits (119), Expect = 7e-06
 Identities = 28/59 (47%), Positives = 33/59 (55%)
 Frame = +1

Query: 76  MSGXXRLAXFPSRGAQMLIKGRXXXXXXXXXXXXXKADXLQVRXRMILSKIIETKTLMG 252
           MSG  R+  FPSR AQ ++K R             K+D L +R R IL KIIETK LMG
Sbjct: 1   MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMG 59


>UniRef50_Q9XGM1 Cluster: Vacuolar ATP synthase subunit D; n=9;
           Eukaryota|Rep: Vacuolar ATP synthase subunit D -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 261

 Score = 39.1 bits (87), Expect = 0.053
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 249 GXXMXEAAFSLAEAKXTTGX-FNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFESXHXGSD 425
           G  M  ++F+L E K   G     VVL+NV +A +++  R     GV LP F+    G  
Sbjct: 60  GDMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGET 119

Query: 426 TYELAXLAPXXXQL 467
             +L  LA    Q+
Sbjct: 120 KNDLTGLARGGQQV 133


>UniRef50_Q1HPT6 Cluster: Vacuolar ATP synthase subunit D; n=1;
           Bombyx mori|Rep: Vacuolar ATP synthase subunit D -
           Bombyx mori (Silk moth)
          Length = 285

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = +3

Query: 258 MXEAAFSLAEAKXTTGXFNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFES 407
           M EA  SLA  K T G  N +VL+NV +A IR+        GVT    E+
Sbjct: 62  MKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEA 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,222,069
Number of Sequences: 1657284
Number of extensions: 4787629
Number of successful extensions: 5099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5099
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)