Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060227.seq
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                         37   0.010

>04_04_1340 + 32766773-32767582
          Length = 269

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 249 GXXMXEAAFSLAEAKXTTG-XFNQVVLQNVTKAXIRLGPRRTMXLGVTLPIF 401
           G  M  ++FSLAEAK   G     VVLQ+V  A +R+   +    GV LP F
Sbjct: 60  GEAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKF 111



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 76  MSGXX-RLAXFPSRGAQMLIKGRXXXXXXXXXXXXXKADXLQVRXRMILSKIIETKTLMG 252
           MSG   RL   P+     ++K R             K+D L V+ R IL KI+  K  MG
Sbjct: 1   MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,588,328
Number of Sequences: 37544
Number of extensions: 131699
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)