Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060227.seq
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...    73   1e-13
AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)
 Frame = +3

Query: 249 GXXMXEAAFSLAEAKXTTGXFNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFESXHXGSDT 428
           G  M EAAFSLAEAK T G F+  V+QNV++A  R+  ++   +GV LP+F++   G D 
Sbjct: 61  GEVMKEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDA 120

Query: 429 YELAXLAPXXXQLAKLKK 482
           Y+L  L      +A+LKK
Sbjct: 121 YDLTGLGKGGANIARLKK 138



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 31/57 (54%)
 Frame = +1

Query: 82  GXXRLAXFPSRGAQMLIKGRXXXXXXXXXXXXXKADXLQVRXRMILSKIIETKTLMG 252
           G  R+A FPSR AQ L+K R             KAD L +R R IL KI+E K LMG
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMG 61


>AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical
           protein Y45F10D.10 protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 279 LAEAKXTTGXFNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFE 404
           L +     G  ++ V   VTK  +R+  RRT  + + +P+ E
Sbjct: 44  LGKLPKNNGDSHEEVYMEVTKHGLRISSRRTRLVKLRIPLIE 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,585
Number of Sequences: 27780
Number of extensions: 111297
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)