Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060227.seq
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...    39   0.002

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 249 GXXMXEAAFSLAEAKXTTGX-FNQVVLQNVTKAXIRLGPRRTMXLGVTLPIFESXHXGSD 425
           G  M  ++F+L E K   G     VVL+NV +A +++  R     GV LP F+    G  
Sbjct: 60  GDMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGET 119

Query: 426 TYELAXLAPXXXQL 467
             +L  LA    Q+
Sbjct: 120 KNDLTGLARGGQQV 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,477
Number of Sequences: 28952
Number of extensions: 107172
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)