Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060226.seq
(644 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 206 5e-52
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 66 9e-10
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 61 2e-08
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 60 6e-08
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 58 1e-07
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 58 2e-07
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 57 3e-07
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 57 4e-07
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 56 7e-07
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 54 3e-06
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 52 2e-05
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 51 3e-05
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 39 0.12
UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:... 35 1.5
UniRef50_Q2W8H3 Cluster: Response regulator; n=2; Magnetospirill... 35 1.9
UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875 p... 33 5.9
UniRef50_Q55K24 Cluster: Putative uncharacterized protein; n=2; ... 33 5.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 206 bits (502), Expect = 5e-52
Identities = 104/135 (77%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Frame = +2
Query: 236 FYGKPSMFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYD 415
F G +FQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYD
Sbjct: 1088 FTGNHRLFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERKTILRGGSYD 1147
Query: 416 FSAYRXYQKRHHRLTNFKFDPAHTRXPRSTSPNHYLLM-TPLT**FSH*TF*LQSSAIPR 592
FSAYR YQKRHHR+TNFKFDPAHTR PRSTS T F+ F LQSSAIPR
Sbjct: 1148 FSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPR 1207
Query: 593 LDTHHLSENRRSSSF 637
LDTHHL E RR F
Sbjct: 1208 LDTHHLPETRRPLHF 1222
Score = 173 bits (422), Expect = 2e-42
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +3
Query: 9 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH 188
GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH
Sbjct: 1012 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH 1071
Query: 189 VSATLVATTRSRSGVIFTGNHR 254
VSATLVATTRSRSGVIFTGNHR
Sbjct: 1072 VSATLVATTRSRSGVIFTGNHR 1093
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 65.7 bits (153), Expect = 9e-10
Identities = 33/64 (51%), Positives = 39/64 (60%)
Frame = +3
Query: 48 PILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRS 227
P+L S AR GHRA+T+ +SQGST+ AP IF+D N V LVA TRSRS
Sbjct: 1212 PLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSRS 1271
Query: 228 GVIF 239
GV F
Sbjct: 1272 GVHF 1275
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/80 (42%), Positives = 45/80 (56%)
Frame = +3
Query: 6 RGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASV 185
+G IG PH P+LT+S ++ G+R+ T SSQG TF PA I +D+ +
Sbjct: 1126 QGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWL 1185
Query: 186 HVSATLVATTRSRSGVIFTG 245
+ LVA TRSRSGV F G
Sbjct: 1186 SSANGLVALTRSRSGVQFMG 1205
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +3
Query: 51 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 230
IL S++ +A+ A G+ A+T SSQGST PA + +D++ + +LVA TRS+SG
Sbjct: 1076 ILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAITRSKSG 1135
Query: 231 VIFTGN 248
++FTG+
Sbjct: 1136 IVFTGD 1141
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 58.4 bits (135), Expect = 1e-07
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 51 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 230
+LT+SQ + G+ A+T SSQGST+ I +D N + + S +LVA TRSR+G
Sbjct: 1094 VLTNSQNSMLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTG 1153
Query: 231 VIFTGNHRCSNQG 269
V F+G+ N G
Sbjct: 1154 VFFSGDPALLNGG 1166
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/80 (41%), Positives = 40/80 (50%)
Frame = +3
Query: 9 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH 188
GFI + + L +S TA GH ALT SSQG TF P I +D + +
Sbjct: 1025 GFISTISSHRPNGKNLVNSISTADTMHQLGHHALTISSSQGMTFDTPVSILLDRHTVLLS 1084
Query: 189 VSATLVATTRSRSGVIFTGN 248
S T VA TRS+ GV F GN
Sbjct: 1085 PSNTFVALTRSKKGVEFLGN 1104
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 57.2 bits (132), Expect = 3e-07
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +3
Query: 54 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 233
LT+S AR G A T SSQGST+ PA I +D N + + + +LVA TRS+ G+
Sbjct: 1202 LTNSMNAARTLNDCGFAATTIASSQGSTYSHPACINLDKNSSQLSHAHSLVALTRSKVGI 1261
Query: 234 IFTGNHRCSNQG 269
+FTG+ N G
Sbjct: 1262 MFTGDLSRLNPG 1273
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 56.8 bits (131), Expect = 4e-07
Identities = 31/80 (38%), Positives = 41/80 (51%)
Frame = +3
Query: 9 GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVH 188
GFI + + P L +S TA GH ALT SSQG T+ P + +D + +
Sbjct: 1050 GFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLLIT 1109
Query: 189 VSATLVATTRSRSGVIFTGN 248
LVA TRSRSG+ F G+
Sbjct: 1110 PQTALVALTRSRSGIYFIGS 1129
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 56.0 bits (129), Expect = 7e-07
Identities = 34/82 (41%), Positives = 42/82 (51%)
Frame = +3
Query: 3 ARGFIGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVAS 182
+ GFI + S L +S + G A+T SSQG TF PA I +D N A
Sbjct: 1023 SEGFIKTTLDFFPSANNLVNSHSVVHISEACGWNAVTISSSQGCTFSDPAFIHLDRNTAL 1082
Query: 183 VHVSATLVATTRSRSGVIFTGN 248
+ S LVA TRSRSGV F G+
Sbjct: 1083 LSPSNCLVALTRSRSGVYFKGD 1104
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 51 ILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSG 230
IL +SQ G+ A+T SSQGST+ A I +D N + + + ++VA TRS+ G
Sbjct: 1253 ILANSQNAGHTLQQCGYAAVTIASSQGSTYDNAACIHLDRNSSLLSPAHSMVALTRSKVG 1312
Query: 231 VIFTGN 248
VIFTG+
Sbjct: 1313 VIFTGD 1318
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 54 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 233
L SQ +A+ G+ A T SSQGST++ P + +D N + + +LVA TRS +
Sbjct: 1094 LACSQSSAKTLRDAGYPATTVSSSQGSTYRTPINLLLDRNSRRLSSAVSLVAATRSTMAI 1153
Query: 234 IFTGNHRCSNQG 269
TG+ QG
Sbjct: 1154 NMTGDRDVLQQG 1165
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 50.8 bits (116), Expect = 3e-05
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 54 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 233
LT++ TA GH A+T S++ TF I +D + + + LVA TRSR+GV
Sbjct: 1131 LTNATNTALSLQQMGHHAITI-SARRVTFTEAHTILLDRHTNLLSPNNCLVALTRSRTGV 1189
Query: 234 IFTGN-HRCSNQ-GLVRRHSLRLCSMT-NPSTSSTHLQMNL-EAWNSLHHRSKNERPFFV 401
F GN H SN G S LC T + + H+ +L + + + RS FV
Sbjct: 1190 YFVGNLHLASNSFGTNYMFSQALCQGTIDLNNVFPHIMPHLPKMYEPIRSRSNR----FV 1245
Query: 402 AGLMTFQPTEXTK 440
+G + F+PT ++
Sbjct: 1246 SGSLNFRPTTNSR 1258
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 38.7 bits (86), Expect = 0.12
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 54 LTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 233
L +S TA G A T +SQG T I +D + + S TLVA TRS GV
Sbjct: 1172 LVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTLVALTRSTVGV 1231
Query: 234 IFTGN 248
F G+
Sbjct: 1232 EFLGD 1236
>UniRef50_A0NFG9 Cluster: ENSANGP00000031041; n=3; Culicidae|Rep:
ENSANGP00000031041 - Anopheles gambiae str. PEST
Length = 308
Score = 35.1 bits (77), Expect = 1.5
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -2
Query: 256 HRWFPVKM-TPERERVVATR---VAETWTEATLESTKIWAGAW-KVEP*EEQKVSARW-P 95
H VK+ P RE V+A VA W+E L + K++ G W K P EQ + RW
Sbjct: 148 HNLAVVKLRNPIRETVMANGQSIVACLWSEIKLRNNKVYLGEWFKYHP--EQNPAFRWLD 205
Query: 94 VPAQTRAVC 68
VP TR C
Sbjct: 206 VPVITRKEC 214
>UniRef50_Q2W8H3 Cluster: Response regulator; n=2;
Magnetospirillum|Rep: Response regulator -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 387
Score = 34.7 bits (76), Expect = 1.9
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 381 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSG 280
+L+ DV+S + P SF LR L+GWSL +A+ G
Sbjct: 144 ALMNDVLSMVAPESFQRSLR-LRGWSLQLAASMG 176
>UniRef50_UPI0000E483F4 Cluster: PREDICTED: similar to KIAA1875
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA1875 protein -
Strongylocentrotus purpuratus
Length = 1827
Score = 33.1 bits (72), Expect = 5.9
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +3
Query: 15 IGRRDNPHKSYPILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVS 194
I +PH +L + QQ + AG GH +++C G+ P ++ DS A +
Sbjct: 140 ISEAKSPHPITCVLYNEQQNEVISAGHGH-IMSWCFRYGAKHLVPQKVVQDSFFAQDTFT 198
Query: 195 ATLVATTRSRS 227
V T SR+
Sbjct: 199 MLAVENTASRA 209
>UniRef50_Q55K24 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 195
Score = 33.1 bits (72), Expect = 5.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 408 DPPRRMVFRSLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNIDG 247
DP +LIG +S PP SF+ VLR + W+ ++ S G V DW + G
Sbjct: 49 DPTIPPAQAALIGPSSTSPPPPSFSQVLR--QRWNDTLVSFIGNVRQSDWELIG 100
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,748,173
Number of Sequences: 1657284
Number of extensions: 13319920
Number of successful extensions: 36102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 35002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36094
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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