Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060226.seq
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   1.8  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   5.3  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.3  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 381 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNIDGF 244
           S+   + SS+  SSF ++        LS  + + A+P   WN+ G+
Sbjct: 152 SISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTSALPSSGWNVTGY 197


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 8   RFYRTSRQSTQILSYINIKSADGASLCRYRPSSAHFLLLSRFNFPGSCPNLRRLQCGFCP 187
           R+      +T +  +  I  A   S  +  P ++  L L+  +   + PNLRR    F P
Sbjct: 374 RYIHRGPSATSLNKFSMISDAASKSRAKLPPLTSGSLKLNTLDISNT-PNLRRFSSSFGP 432

Query: 188 R 190
           R
Sbjct: 433 R 433


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = -2

Query: 349 SKFICKCVEEVEGLVIEHSLKEWRRTRP*LEHRWFPVKMTPER---ERVVATRVA--ETW 185
           ++F  K  EE+     +HSL+ WR+    ++ R  PV  + E    +R++    +  + +
Sbjct: 143 NRFGTKVYEELARKYPQHSLESWRQHYKYMKKRLPPVSDSDESNYCQRIIVKPYSSQKDY 202

Query: 184 TEATLEST 161
           T++T E T
Sbjct: 203 TQSTHEQT 210


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 290  QRVAPYQALIGTSMVSRKNDSRTGTSCXDESSRNVDRSHIGVDEDLGRSLES*TLRGAKS 111
            Q+  PY  ++  S+ ++       T C  E   ++ RS +GV+  L   L S     + S
Sbjct: 1284 QKQWPYAIIVAHSIDAKTFQGVVRTFCKSEVKESMLRSGVGVNLQLSLQLMSDAHASSMS 1343

Query: 110  ERS 102
            E S
Sbjct: 1344 EFS 1346


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 281 APYQALIGTSMVSRKNDSRTGTSCXDESSRNVDRSHIGVDEDL 153
           A Y      S+VS   D  + T+   +++R+   SH  + EDL
Sbjct: 510 ASYNTDDANSVVSPSKDGISTTTVSSDATRSSQSSHFRIIEDL 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,045
Number of Sequences: 5004
Number of extensions: 55233
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)