Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060226.seq
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0092 + 19973364-19975983,19976272-19976648 32 0.45
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465... 30 1.8
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 29 3.2
05_05_0200 - 23171803-23171906,23172304-23173951 29 3.2
11_06_0636 - 25711965-25712232,25712438-25712502,25713033-257132... 29 4.2
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 7.3
03_05_0615 + 26137785-26138593,26139307-26141368 28 7.3
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 28 7.3
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 27 9.7
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 27 9.7
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -3
Query: 381 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNI 253
+L + +S PSSF LR+L SL+ + SGA+P WNI
Sbjct: 180 ALAENTLSGSIPSSFGQ-LRRLSFLSLAFNNLSGAIPDPIWNI 221
>06_03_0066 -
16145398-16145475,16145638-16145700,16146432-16146518,
16147168-16147246,16147359-16147478,16149289-16149440
Length = 192
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 164 RLQCGFCPRFCYSRRXNSFPFWSHFY 241
R++C P FC +R+ N +PF FY
Sbjct: 117 RVECPKYPGFCLTRQKNEYPFIEVFY 142
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 183 VHVSATLVATTRSRSGVIFTGNH--RCSNQGLVRRHSLRLCSMTNPSTSSTHLQMNLEAW 356
V VS T A S SGV+ GN+ C N GL LR ++ ++ Q EA
Sbjct: 471 VEVSITPTAQDHSSSGVMTDGNNCSSCCNAGLAEGGGLRGAIFSSKEAAAFLSQRWKEAI 530
Query: 357 NSLH 368
N+ H
Sbjct: 531 NADH 534
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 303 MTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF 419
+T P+TS T L+ S R RP +V GLM F
Sbjct: 294 LTRPATSRTSLEKRYSFIQSEERRFVESRPEWVGGLMDF 332
>11_06_0636 -
25711965-25712232,25712438-25712502,25713033-25713296,
25713405-25713854
Length = 348
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 216 RSRSGVIFTGNHRCSNQGLVRRHSLRLCSMTNPSTSSTHLQMNLEAW 356
++ +G++F GNH S+ G S+R + NP+ S H N AW
Sbjct: 180 QNTAGIMF-GNHTASDHGRRLNSSVRSLRVMNPALSH-HQLANNSAW 224
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 33 PHKSYPILTSSQQTARVCAGTG-HRALTFCSS---QGSTFQAPA-QIFVDSNVASVHVSA 197
P P T++ T+ VC+G G R L + S Q + + A ++ +D +A VH +
Sbjct: 267 PDAPPPAATATATTSSVCSGNGDRRQLNWRDSHNNQSAEWSASQDELDLDDELAGVHRRS 326
Query: 198 TLVATTRSRSGVIFTGNHR 254
++ RSR+ + + R
Sbjct: 327 AARSSKRSRTAEVHNLSER 345
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 323 LNTFANELGGMELITSPIKERKTILRGGSYDFSAYRXYQKRHHRLTNFKFDP 478
+N +L ME + S +KE + +R +YD HHRL+ DP
Sbjct: 43 MNALLLKLADMEELDSQLKEWRNKVRELAYDVEDCIDAFAHHHRLSRGDADP 94
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -1
Query: 242 RKNDSRTGTSCXDESSRNVDRSHIGVDEDLGRSLES*TLRGAKSERSMACTGTDSRRL 69
+KND T T C + + + S GV R+ E L+G S C TD L
Sbjct: 18 QKNDDTTATGCLLDPWQIIRNSIAGVRGKRKRNEEIQHLQGEASSSQALCATTDINNL 75
>03_02_0032 +
5143223-5143238,5143477-5143526,5144077-5144173,
5145272-5145559,5146161-5146402
Length = 230
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 FLLLSRFNFPGSCPNLRRLQCG-FCPRFCYSRRXNSFPFW 229
F+ L N+ G +L C FC CY N P W
Sbjct: 104 FMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKW 143
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 213 LXRRE*QKRGQKPHWSRRRFGQEPGKL 133
L R E ++ G++ W RRR+G E GKL
Sbjct: 13 LRREEGEEEGEEVGW-RRRWGSEAGKL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,686
Number of Sequences: 37544
Number of extensions: 374271
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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