Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060226.seq
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45516| Best HMM Match : I-set (HMM E-Value=1.1e-26)                 30   1.4  
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         28   5.7  
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)            28   5.7  
SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   27   9.9  

>SB_45516| Best HMM Match : I-set (HMM E-Value=1.1e-26)
          Length = 939

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
 Frame = +3

Query: 48  PILTSSQQTARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRS 227
           P++ ++  + +V A  G+RA   C + G+             +A       L  T    S
Sbjct: 463 PVINTTASSRQVAAWIGYRATLDCYADGNPLPKYTWRNASGVIAVSETGGKLTVTAHDNS 522

Query: 228 GVIFTGNHRC--SNQGLVRRHSLRLCSMTNPSTSSTHLQMNLEAWNSLH 368
                G++ C  SN      H++ L  +  P   +  L +N+   NSLH
Sbjct: 523 AF---GDYTCEASNSRGRDSHTVTLIKVGKPGPIT--LNVNVRTQNSLH 566


>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 253 RWFPVKMTPERERVVATRVAETWTEATL 170
           +WF   +T +R+RVV   V+ TW   TL
Sbjct: 451 KWFGSYLTRKRQRVVLDGVSSTWLPVTL 478


>SB_46417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 272 GTAPLFEAMLNDQPFNFLNTFANELGGMELITSPIKERK 388
           GT P   A LND+ F +++    ++G ++ ++ P++ ++
Sbjct: 21  GTGPRAIAELNDRAFAWVSQAQRDIGSLDALSQPLESQE 59


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 372 GDVMSSMPPSSFANVLRKLKGWSLSIASKS 283
           G+V  S PP+S + V + ++GW+L    K+
Sbjct: 400 GNVAESAPPTSSSPVCQAVQGWALKTTHKA 429


>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
          Length = 817

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 440 KRHHRLTNFKFDPAHTRXPRSTSPNH---YLLM 529
           KRHHR    K DPAH   PR  + +H   YLL+
Sbjct: 197 KRHHRAP--KDDPAHACQPRDRAQHHGKGYLLV 227


>SB_26488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +1

Query: 70  RRRESVPVQAIERSLFAPLKVQLSRLLPK 156
           + +ES+ ++AI+R++ + L V+ S+ LPK
Sbjct: 112 KTKESIRIRAIKRAIRSKLSVKSSKKLPK 140


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +3

Query: 219 SRSGVIFTGNHRCSNQGLVRRHSLRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFF 398
           SR GV +  ++   N  LV++  +   ++ +  T++  +     AW     ++   +P  
Sbjct: 481 SRFGVQYYNSNNGKNVALVKQPPVAQTTVPSQETTAQQMLKAAAAWQQATGQTLQYQPAA 540

Query: 399 VAGLMTFQPTEXTKKDITG 455
            +   T QPT       TG
Sbjct: 541 PSAYQTQQPTVQATVQATG 559


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
 Frame = +2

Query: 140  PGSCPNLRRLQCGFCPRFCYSRRXNSFPFWSHFYGKPSMFQSRPGTAPLFEAMLNDQPFN 319
            PGSCP++   QC      C        PF  +    PS + S P   P+ +     QP+ 
Sbjct: 929  PGSCPDVCAPQC--MESCCGYPPSEPPPFPGYGMSNPS-YPSYPQQYPMLQPYPQQQPYP 985

Query: 320  FLNTF--ANELGGMELITSPIKERKTILRG---GSYDFSAYRXYQKRHHRLTN 463
                +    +  G +++  P +  +  L G    S   +  R YQ   HR TN
Sbjct: 986  QQQPYPQQRQYAGQQMVACPQQVLRNGLSGRCRASVLDAPSRTYQPT-HRQTN 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,487,770
Number of Sequences: 59808
Number of extensions: 437977
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)