Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060226.seq
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    31   0.53 
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    27   8.6  

>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
 Frame = +3

Query: 9   GFIGRRDNPHKSYPILTSSQQTARVCAGTGHRAL-----TFCSSQGSTFQAPAQIFVDSN 173
           G  G R++P    PI+TSS  ++   + + HR +        SS  ++   P++   D +
Sbjct: 168 GKSGSRNSPE---PIMTSSASSSSASSSSSHRPIRQSVSIATSSPATSSSTPSKYNPDPS 224

Query: 174 VASVHVSATLVATTRSRSGVI-FTGNHRCSNQGLVRRH 284
           + +V V  + VA    R  V    G   C N  L R H
Sbjct: 225 LRAVVVDGSNVAMLHGRKEVFSCAGLRECLNYFLERGH 262


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 242 GKPSMFQSRPGTAPLFEAMLNDQPFNFLNTFANELGGMELITS 370
           G+  +FQ+ PG + L +  L + P  F +  A E+    +I S
Sbjct: 253 GREILFQAGPGNSWLLQTYLENAPHPFCSVLAQEIFQSGIIPS 295


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 238 KMTPERERVVATRVAETWTEATLESTKIWAGAWKVEP*EEQKVSARWP 95
           K TP +E VV + +  T     LES++   G W  E   ++K   + P
Sbjct: 410 KCTPVKECVVESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCP 457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,885
Number of Sequences: 27780
Number of extensions: 319283
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)