Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060226.seq
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27710.1 68416.m03460 zinc finger protein-related contains si...    30   1.1  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    30   1.1  
At5g57230.1 68418.m07150 expressed protein                             29   2.0  
At4g30150.1 68417.m04287 expressed protein                             29   2.6  
At2g37380.1 68415.m04584 expressed protein                             28   4.6  
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    28   6.1  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   6.1  
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa...    28   6.1  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    28   6.1  

>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +3

Query: 165 DSNVASVHVSATLVATTRSRSGVIFTGNHRCSNQG-LVRRHSLRLCSMTNPSTSSTHLQM 341
           D N +   V    V +T+S S VI   +   + +  LVR   L         T   + Q 
Sbjct: 23  DDNYSEAEVDLQPVTSTKSTSQVIKKESLVAAQKEILVRVMELLSVKENQARTLLIYYQW 82

Query: 342 NLEAWNSLHHRSKNERPFFVAGLMTFQPTEXTKK 443
           N+E   S+      +R F  AGL  F P+  T K
Sbjct: 83  NVEKLFSVFADQGKDRMFSCAGLTVFVPSLVTSK 116


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 131 FNFPGSCPNLRRLQCGFCPRFCYSRRXNSFPFWSHFYGKPSMFQS-RPGTAPLFE 292
           F F G    L        P F  +    S+PF SH + +P+   S  PG AP  E
Sbjct: 428 FGFNGDASVLPSTPFSLSPAFSSNTNTGSYPFASHEWSRPTEQGSMNPGYAPTHE 482


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 152 PNLR--RLQCGFCPRFCYSRRXNSFPFWSHFY 241
           PN++  R++C   P FC +R+ N +PF   F+
Sbjct: 79  PNIKFMRVECPKYPGFCITRQKNEYPFIEIFH 110


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 393  MVFRSLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNIDGF 244
            M  RSL   V+S MPP    + +  +KG S+++   S  +    WN +G+
Sbjct: 858  MSSRSLYRQVISLMPPKKTKD-MAGIKGDSVAVRCGSDWIKEKSWNYEGY 906


>At2g37380.1 68415.m04584 expressed protein 
          Length = 321

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 249 HRCSNQGLVRRHSLRLCSMTNPSTSS 326
           HR S  G+++RHS   CS ++ S+SS
Sbjct: 225 HRRSFSGVIQRHSQAKCSTSSSSSSS 250


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 614 LKDDECQVSGWLRTGVKKFSAKIIMSE-VSLAGSGLEM*NE 495
           +K+D  ++ G  RTG+ K S  + +SE   +A + L++ +E
Sbjct: 93  IKNDFAEIGGRFRTGISKLSGNLPVSEFTKIASNFLQLSSE 133


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 261 NQGLVRRHSLRL--CSMTNPSTSSTHLQMN 344
           NQ L+RR S      S+T+PSTSS H  +N
Sbjct: 78  NQKLLRRRSFDHPPSSLTSPSTSSAHRSLN 107


>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 594

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 170 QCGFCPRFCYSRRXNSFPFWSHFYGKPSMFQSRPGTAPLFEAMLNDQ-PFNFLNTFANEL 346
           +CG  P   YSRR + +   S +Y +PS + SRP     + +  +D  P +  +TF N  
Sbjct: 247 RCGHRPSD-YSRRPSDYSRPSDYYSRPSNY-SRPSDVSRWGSSDDDNGPGDSPSTFLNSP 304

Query: 347 G 349
           G
Sbjct: 305 G 305


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 273 VRRHSLRLCSMTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAG 407
           V++ +L L  + +  TSS+HL++ L+   SL  RSK E   F AG
Sbjct: 852 VQKIALSLGHICSNETSSSHLKIALDLLFSL-SRSKAEEILFAAG 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,801
Number of Sequences: 28952
Number of extensions: 299334
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)