Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060224.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.3  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.0  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.0  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 102 GSFFQKVHFVQA-CRERWSGA*CRKHVFD 19
           G+   K++  Q  C+E W GA C  +  D
Sbjct: 81  GTCVDKINAFQCICKEGWEGALCNINTDD 109


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 6   EACVRQIHASGIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFE 140
           EAC  + + S IK      Y        +  N S VER K   FE
Sbjct: 462 EACSLKDYVSRIKPNQKHIYYITGESKEQVANSSFVERVKKRGFE 506


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 658 FLVHHTSCQKKYQ 620
           F  HHTSC K ++
Sbjct: 31  FYPHHTSCDKYWK 43


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 658 FLVHHTSCQKKYQ 620
           F  HHTSC K ++
Sbjct: 31  FYPHHTSCDKYWK 43


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 6   EACVRQIHASGIKHQTSAPYTPEQ 77
           E  +R++   GI      PY P Q
Sbjct: 415 ECGIRRVQQLGILRYAKGPYQPSQ 438


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 6   EACVRQIHASGIKHQTSAPYTPEQ 77
           E  +R++   GI      PY P Q
Sbjct: 415 ECGIRRVQQLGILRYAKGPYQPSQ 438


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 345 DLRSHFKRFC 316
           DLRSHF+  C
Sbjct: 167 DLRSHFRALC 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,946
Number of Sequences: 336
Number of extensions: 3597
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)