Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060224.seq
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 28 1.4
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.9
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 4.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.8
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 PKQNRLKWDRKSQELVFVGYCENTKGYRL---IDPNSKKAVISRDVIFIESSIDNVTQKP 481
PKQN W+ ++ +LVF N G+ L D + +++ +V F E+ N+++ P
Sbjct: 102 PKQNMKVWNTETGQLVFSFVQRNQTGWNLQYTCDESLAARLVTNEVHFYETG--NMSKGP 159
Query: 482 SLK 490
K
Sbjct: 160 IAK 162
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 386 GYRLIDPNSKKAVISRDVIFIESSIDNVTQ 475
G ++ID +K+ V++ DVI I+ S+ VT+
Sbjct: 169 GTKMIDSLTKEKVLAGDVISIDKSVGRVTK 198
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 560 CRLMIALKQTLKMSHQHLQVLILLL 634
C L+ LKQ +K SH H +VL++ L
Sbjct: 534 CSLLSLLKQYIKDSHVHHEVLLISL 558
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 395 LIDPNSKKAVISRDVIFIESSIDNVTQKPSLKPQ 496
LI + + +I D + ES+ DNV + P KP+
Sbjct: 155 LISGDDDQELIDEDELLDESAHDNVLKVPECKPE 188
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.8
Identities = 29/116 (25%), Positives = 52/116 (44%)
Frame = +2
Query: 278 RIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRDVIFIESS 457
RI +K + + + +L+ +K +E V+ + + KKAV +R+
Sbjct: 359 RINNAKTELSLSLEKKLE-AKKQKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRL 417
Query: 458 IDNVTQKPSLKPQLITLLSVQV*VAHKKAMKYL*CRLMIALKQTLKMSHQHLQVLI 625
+D L+ L T LS ++ + +KA + + +QT+K SH H Q LI
Sbjct: 418 VD--LNDLELQKDLSTYLSKEL-ASTEKAFR-------LVKQQTVKSSHSHYQELI 463
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 54 SAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVT 233
S PY P+ +G +E+ N+++ + +C+ W + ++ N + ++T
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCV---CSTHPNTWVDHISLVQQSYNNA-IHSATQMT 1129
Query: 234 PYE 242
P+E
Sbjct: 1130 PFE 1132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,678
Number of Sequences: 5004
Number of extensions: 57750
Number of successful extensions: 163
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -