Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060224.seq
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 88 7e-18
05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390 75 4e-14
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 71 9e-13
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 70 1e-12
09_02_0336 - 7397745-7398308,7398813-7400723 67 1e-11
05_03_0207 + 10103831-10104451 60 2e-09
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 55 6e-08
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 42 6e-04
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 34 0.12
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 31 1.1
09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260 29 3.4
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 29 4.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.5
08_02_0360 + 16196712-16197560,16198126-16198875 29 4.5
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 87.8 bits (208), Expect = 7e-18
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +3
Query: 39 IKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRV 218
++H T PYTP+QNG++E+MNR+++ +A CML A++ K +WAEA TA Y+INRSPS
Sbjct: 500 VRHHT-IPYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIP 558
Query: 219 LAEVTPYEKWT 251
L + TP E W+
Sbjct: 559 LNKKTPIEVWS 569
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 269 SHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRDVIFI 448
S LR+FG A HV K + ++ + +F+GY KGY+L +P + K +SR V+F
Sbjct: 576 SQLRVFGCTAYAHVDNG---KLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFN 632
Query: 449 ESSIDN 466
ES + N
Sbjct: 633 ESVMFN 638
>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
Length = 397
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GIKH+ SAPY P QNG+ E+ NR+L+E A+ ML E K ++W EAV+TA + INR
Sbjct: 107 GIKHEFSAPYDPPQNGIVERKNRTLIEAARAMLDEYKTSDVFWVEAVSTACHAINRLYLH 166
Query: 216 VLAEVTPYE 242
+ + T YE
Sbjct: 167 KILKKTSYE 175
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KPN+S+ +FGSK + + K+ K E +GY N YR+ + S ++RD
Sbjct: 181 KPNVSYFHVFGSKCFILSKRPRSSKFSPKVDEGFLLGYESNAHAYRVFNKTSGIVEVTRD 240
Query: 437 VIFIESS 457
V F ES+
Sbjct: 241 VTFDESN 247
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 70.9 bits (166), Expect = 9e-13
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI H+ + PY+P+ NG++E+ NR+L E ML A L K +W EAV TA +++N+ P +
Sbjct: 473 GIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMK 532
Query: 216 VLAEVTPYEKW 248
EVT +E+W
Sbjct: 533 -HKEVTQFEEW 542
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNS 412
K N+S+LR +G A V+VP + K K+ + VF+GY ++ GYR + NS
Sbjct: 546 KLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNS 597
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI H+ + PY P+ NG++E+ NR+L E ML L K +W EAV TA Y++N+ P +
Sbjct: 293 GIIHERTPPYLPQSNGVAERKNRTLAEIVNAMLDTTGLCKEWWGEAVLTACYVLNKIPMK 352
Query: 216 VLAEVTPYEKW 248
+VTP+E+W
Sbjct: 353 -HKKVTPFEEW 362
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVI--- 427
K N+S+LR +G A V+VP + K + + VF+GY ++ GYR + NS +
Sbjct: 366 KLNLSYLRTWGCLAKVNVPIAKKRKLGPNTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVG 425
Query: 428 ----SRDVIFIESSIDNVTQKPSLKPQ 496
SRD IF E+ + PS Q
Sbjct: 426 TIFESRDAIFFENEFP-MKHTPSTSSQ 451
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/75 (42%), Positives = 49/75 (65%)
Frame = +3
Query: 33 SGIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPS 212
+GI Q S P P+QNG++E+ NR+L++ + M+ + L W EA+ TA +I+NR PS
Sbjct: 317 NGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMMSYSTLPLGLWMEALKTAIHILNRVPS 376
Query: 213 RVLAEVTPYEKWTSR 257
+ + + TPYE WT R
Sbjct: 377 KSVPK-TPYELWTGR 390
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 260 PNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNS-KKAVISRD 436
P+++HLR++GS V N K D K+ F+ Y E +KGYR PNS K V +R
Sbjct: 392 PSLTHLRVWGSPTEAKVFNSNIGKLDPKTVSCHFISYPERSKGYRFYYPNSYTKFVETRH 451
Query: 437 VIFIESSI 460
+F+E +
Sbjct: 452 AVFLEDEM 459
>05_03_0207 + 10103831-10104451
Length = 206
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/70 (38%), Positives = 45/70 (64%)
Frame = +3
Query: 48 QTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAE 227
Q + P TP+ NG+SE+ NR+L++ + M+ + L +W A+ TAA+ +NR PS+ + +
Sbjct: 108 QLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLPLSFWDYALGTAAFTLNRVPSKSV-D 166
Query: 228 VTPYEKWTSR 257
T YE WT +
Sbjct: 167 KTLYEIWTGK 176
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI Q + P TP+ NG+SE+ NR+L++ + M+ + L +W+ A+ TA + +NR PS+
Sbjct: 513 GIAPQFTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLSLSFWSYALETAVFTLNRVPSK 572
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLI-------DPNSK 415
KP++S+LR +G A V+VP + K K+ + VF+GY ++ YR + D +
Sbjct: 503 KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 562
Query: 416 KAVISRDVIFIES 454
+ SRD F ES
Sbjct: 563 TIMESRDATFFES 575
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVE 116
GI H+ ++ Y+PE NG++E+ NR+L +
Sbjct: 295 GIIHERTSLYSPESNGIAERKNRTLTD 321
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFE-AKLQKIYWAEAVATAAYIINRSPS 212
GIK ++P P NG E+ N +++ K F K W E + + +PS
Sbjct: 1611 GIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPS 1670
Query: 213 RVLAEVTPY 239
R E TP+
Sbjct: 1671 RATGE-TPF 1678
>09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260
Length = 229
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 471 VTLSMELSINITSLLITAFLLLGSINLYPFVFS 373
++L ME I +T +++T +LLGS+NL FS
Sbjct: 111 LSLVMENIIVVTMIVMTRIMLLGSVNLASVEFS 143
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMN--------RSLVERAKCMLFEAKLQKIYWA 167
G KH + PY P+ +G +E N +++V C L K YWA
Sbjct: 121 GAKHNVATPYHPQTSGQAETSNKQIKNILQKTIVYEKSCRLPVELEHKAYWA 172
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFE-AKLQKIYWAEAVATAAYIINRSPS 212
GIK ++P P NG E+ N + + K F K W E + + PS
Sbjct: 1702 GIKLCFASPAHPRSNGQVERANAEIFKGLKTKTFNILKKHGDSWIEELPAVLWANRTIPS 1761
Query: 213 RVLAEVTPY 239
R E TP+
Sbjct: 1762 RATGE-TPF 1769
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSL 110
G KH + PY P+ +G +E +N+ +
Sbjct: 95 GAKHNVATPYHPQTSGQAETLNKQI 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,921
Number of Sequences: 37544
Number of extensions: 344670
Number of successful extensions: 707
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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