Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060224.seq
(678 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 91 1e-18
X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p... 83 3e-16
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p... 83 3e-16
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros... 83 3e-16
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot... 83 3e-16
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro... 83 3e-16
AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p pro... 56 6e-08
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 33 0.47
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 31 1.4
AE013599-3454|AAM71115.1| 1114|Drosophila melanogaster CG30275-P... 30 3.3
AE013599-3453|AAM71114.1| 1127|Drosophila melanogaster CG30275-P... 30 3.3
>X07656-2|CAA30503.1| 982|Drosophila melanogaster protein (
Drosophila melanogasterretrotransposon 1731 sequence. ).
Length = 982
Score = 91.5 bits (217), Expect = 1e-18
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +3
Query: 24 IHASGIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINR 203
+ A GI Q + P+TP+QNG++E+ NR+LVE A+CML +++L + WAEA+ TA Y+ NR
Sbjct: 282 LKAHGIARQLTIPHTPQQNGVAERANRTLVEMARCMLLQSELGEALWAEAINTAVYLRNR 341
Query: 204 SPSRVLAEVTPYEKWTSR 257
S SR L TP E+WT +
Sbjct: 342 STSRALQSKTPMEEWTGK 359
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +2
Query: 260 PNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRDV 439
P +SHLR+FG+ A+ ++ K++ K +E +GY KGYRL D + + +DV
Sbjct: 361 PAVSHLRVFGAIAVALDKGVHKGKFESKGKEYRMIGYSIAAKGYRLFDKEKRCVIEKQDV 420
Query: 440 IFIES 454
+F ES
Sbjct: 421 LFDES 425
>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
protein protein.
Length = 1017
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI + + P+TP+ NG+SE+M R++ E+A+ M+ AKL K +W EAV TA Y+INR PSR
Sbjct: 176 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 235
Query: 216 VLAE--VTPYEKWTSR 257
L + TPYE W ++
Sbjct: 236 ALVDSSKTPYEMWHNK 251
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KP + HLR+FG+ VH+ K + K+D KS + +FVGY N G++L D ++K +++RD
Sbjct: 252 KPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 308
Query: 437 VIFIESSIDN 466
V+ E+++ N
Sbjct: 309 VVVDETNMVN 318
>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
protein protein.
Length = 1409
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI + + P+TP+ NG+SE+M R++ E+A+ M+ AKL K +W EAV TA Y+INR PSR
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627
Query: 216 VLAE--VTPYEKWTSR 257
L + TPYE W ++
Sbjct: 628 ALVDSSKTPYEMWHNK 643
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KP + HLR+FG+ VH+ K + K+D KS + +FVGY N G++L D ++K +++RD
Sbjct: 644 KPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 700
Query: 437 VIFIESSIDN 466
V+ E+++ N
Sbjct: 701 VVVDETNMVN 710
>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
Drosophila melanogastervirus like particle RNA (VLP
H-RNA). ).
Length = 1288
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI + + P+TP+ NG+SE+M R++ E+A+ M+ AKL K +W EAV TA Y+INR PSR
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627
Query: 216 VLAE--VTPYEKWTSR 257
L + TPYE W ++
Sbjct: 628 ALVDSSKTPYEMWHNK 643
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KP + HLR+FG+ VH+ K + K+D KS + +FVGY N G++L D ++K +++RD
Sbjct: 644 KPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 700
Query: 437 VIFIESSIDN 466
V+ E+++ N
Sbjct: 701 VVVDETNMVN 710
>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
protein.
Length = 1409
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI + + P+TP+ NG+SE+M R++ E+A+ M+ AKL K +W EAV TA Y+INR PSR
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627
Query: 216 VLAE--VTPYEKWTSR 257
L + TPYE W ++
Sbjct: 628 ALVDSSKTPYEMWHNK 643
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KP + HLR+FG+ VH+ K + K+D KS + +FVGY N G++L D ++K +++RD
Sbjct: 644 KPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 700
Query: 437 VIFIESSIDN 466
V+ E+++ N
Sbjct: 701 VVVDETNMVN 710
>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p
protein.
Length = 1409
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIINRSPSR 215
GI + + P+TP+ NG+SE+M R++ E+A+ M+ AKL K +W EAV TA Y+INR PSR
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627
Query: 216 VLAE--VTPYEKWTSR 257
L + TPYE W ++
Sbjct: 628 ALVDSSKTPYEMWHNK 643
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +2
Query: 257 KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRD 436
KP + HLR+FG+ VH+ K + K+D KS + +FVGY N G++L D ++K +++RD
Sbjct: 644 KPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 700
Query: 437 VIFIESSIDN 466
V+ E+++ N
Sbjct: 701 VVVDETNMVN 710
>AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p
protein.
Length = 714
Score = 55.6 bits (128), Expect = 6e-08
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +3
Query: 120 AKCMLFEAKLQKIYWAEAVATAAYIINRSPSRVLAEVTPYEKWTSR 257
A+CML +++L + WAEA+ TA Y+ NRS SR L TP E+WT +
Sbjct: 2 ARCMLLQSELGEALWAEAINTAVYLRNRSTSRALQSKTPMEEWTGK 47
Score = 52.0 bits (119), Expect = 7e-07
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +2
Query: 260 PNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGYRLIDPNSKKAVISRDV 439
P +SHLR+FG+ A+ ++ K++ K +E +GY KGYRL D + + RDV
Sbjct: 49 PAVSHLRVFGAIAVALDKGVHKGKFESKGKEYRMIGYSIAAKGYRLFDKEKRCVIEKRDV 108
Query: 440 IFIES 454
+F ES
Sbjct: 109 LFDES 113
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 32.7 bits (71), Expect = 0.47
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSL 110
G++HQ +APYTP++N +E+ NR++
Sbjct: 246 GVRHQLTAPYTPQENP-TERANRTV 269
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed DNA
polymerase protein.
Length = 1013
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +3
Query: 36 GIKHQTSAPYTPEQNGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAY------II 197
G+ + P NG E+ + +L+E A+C+ + + +ATA Y +I
Sbjct: 863 GVSISNAPPLHSVSNGQVERFHSTLIELARCLKIDKGISDTVELVLLATARYNMSIHSVI 922
Query: 198 NRSPSRVL 221
N+ P+ V+
Sbjct: 923 NKKPAEVM 930
>AE013599-3454|AAM71115.1| 1114|Drosophila melanogaster CG30275-PC,
isoform C protein.
Length = 1114
Score = 29.9 bits (64), Expect = 3.3
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 242 KMD**KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGY---RLIDPNS 412
K+D PN S +++ K N +KW SQ+LV +G+ TK + + NS
Sbjct: 651 KLDLPPPNFSR-----DNLIIYRHKLNPVKWFTNSQKLVIIGFSAVTKAFLRQLVFQWNS 705
Query: 413 KKAV-ISRDVIFIE 451
K A+ + RD F++
Sbjct: 706 KDALNMRRDKKFVK 719
>AE013599-3453|AAM71114.1| 1127|Drosophila melanogaster CG30275-PA,
isoform A protein.
Length = 1127
Score = 29.9 bits (64), Expect = 3.3
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 242 KMD**KPNISHLRIFGSKAMVHVPKQNRLKWDRKSQELVFVGYCENTKGY---RLIDPNS 412
K+D PN S +++ K N +KW SQ+LV +G+ TK + + NS
Sbjct: 664 KLDLPPPNFSR-----DNLIIYRHKLNPVKWFTNSQKLVIIGFSAVTKAFLRQLVFQWNS 718
Query: 413 KKAV-ISRDVIFIE 451
K A+ + RD F++
Sbjct: 719 KDALNMRRDKKFVK 732
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,841,279
Number of Sequences: 53049
Number of extensions: 602901
Number of successful extensions: 1327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -