Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060224.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   2.8  
At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    28   6.5  
At5g35360.1 68418.m04203 acetyl-CoA carboxylase, biotin carboxyl...    28   6.5  
At4g03820.2 68417.m00529 expressed protein                             28   6.5  
At4g03820.1 68417.m00528 expressed protein                             28   6.5  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    28   6.5  
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil...    27   8.6  

>At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 760

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 480 GF*VTLSMELSINITSLLITAFLLLGSINLYPFVFSQ*PTKTNSC 346
           GF V + +  ++++ S LI  +   G INL   VF+  PTK   C
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 392 RLIDPNSKKAVISRDVIFIESSIDNVTQKPSLKPQLITLLSVQV 523
           RLID NSK  V ++D  +IE+   N+     L P+L T + V +
Sbjct: 97  RLIDSNSK--VNNKDEGYIENQQQNIADAIDLLPRLTTGIDVNI 138


>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 78  NGLSEKMNRSLVERAKCMLFEAKLQKIYWAEAVATAAYIIN 200
           +G+S KM  +LVE AK  +  +KL  IY+AE       + N
Sbjct: 302 SGMSNKMWDALVEHAKTCVQSSKLY-IYYAEDSRNVGVVFN 341


>At5g35360.1 68418.m04203 acetyl-CoA carboxylase, biotin carboxylase
           subunit (CAC2) identical to acetyl-CoA carboxylase,
           biotin carboxylase subunit (CAC2) [Arabidopsis thaliana]
           GI:1905876
          Length = 537

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 174 LLRPNIFSAVLPQTACILLAPPDYGSFFQKVHFVQACRE 58
           L+ PN+ SA + +  C +L P  YG   +   FV+ CR+
Sbjct: 133 LVIPNVLSAAISR-GCTMLHP-GYGFLSENALFVEMCRD 169


>At4g03820.2 68417.m00529 expressed protein 
          Length = 453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = +3

Query: 81  GLSEKMNRSLVERAKCMLFEAKLQKIY----WAEAVATAAYIINRSPSRVLAEVTPYEKW 248
           G   K+ RS+   A  +L    LQ IY    +A       YIIN + S VLA       W
Sbjct: 129 GYEAKIQRSMKLLAIFVLPSTTLQAIYRIWWYASGFNQIPYIINPTLSHVLACTLQLSSW 188

Query: 249 TSRNQTF 269
             R   F
Sbjct: 189 LYRTSLF 195


>At4g03820.1 68417.m00528 expressed protein 
          Length = 437

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = +3

Query: 81  GLSEKMNRSLVERAKCMLFEAKLQKIY----WAEAVATAAYIINRSPSRVLAEVTPYEKW 248
           G   K+ RS+   A  +L    LQ IY    +A       YIIN + S VLA       W
Sbjct: 129 GYEAKIQRSMKLLAIFVLPSTTLQAIYRIWWYASGFNQIPYIINPTLSHVLACTLQLSSW 188

Query: 249 TSRNQTF 269
             R   F
Sbjct: 189 LYRTSLF 195


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 4   TRRVCVKYMLPASSTRPALPTRLNKMDFLKK*TVVWWSEQNACCLRQNCR 153
           +++VCV   +     R AL   + +   +K      W E  ACC   NC+
Sbjct: 208 SQKVCV---VQTKGEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQ 254


>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar to
            SP|P25439 Homeotic gene regulator (Brahma protein)
            {Drosophila melanogaster}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +1

Query: 487  KASAYYFTLSSSLSRAQKSN 546
            K S Y FT SSS SRAQ SN
Sbjct: 1108 KRSRYSFTCSSSDSRAQSSN 1127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,465
Number of Sequences: 28952
Number of extensions: 293007
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)