Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   2.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   3.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   3.7  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 250 YRYNLQFYSSSCLFLY 203
           +RY L F  + C FLY
Sbjct: 131 HRYTLSFIENYCQFLY 146


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 258 ENIKKVPVSDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNK 389
           E  ++  +SD+E   +   ++     K   K  D  +DE++D K
Sbjct: 216 EKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTK 259


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 336 KSXKKGADRSDDEEDDNKSIINNTXNVSSKP 428
           K   +  D  DD++DD  +  N     +S P
Sbjct: 281 KEEHESMDDDDDDDDDMSNSENQNPRFTSSP 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,715
Number of Sequences: 336
Number of extensions: 1512
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)