Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   3.9  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   3.9  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   5.2  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   5.2  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   6.8  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    25   9.0  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   9.0  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 76  TSVKKENHNMSKKRGNKKNQDLDDDFDE 159
           +S+ K++ N  K+   K N D DD+F++
Sbjct: 581 SSISKKSSNSFKELSPKTNNDEDDEFND 608


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 252 RXENIKKVPVSDEEDVPKPA-AKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKP 428
           R  NI+K+   DE   PK A A+      KS +     SDDEED  K       ++SS  
Sbjct: 509 RRRNIQKI-FYDESLSPKDAYAEYKGESAKSSESDLVVSDDEEDFFKVSKVANESISSNH 567

Query: 429 AKL 437
            KL
Sbjct: 568 EKL 570


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 357 DRSDDEEDDNKSIINNTXNVSSK 425
           D  DDEED++    NN  N+  +
Sbjct: 345 DTEDDEEDESSDASNNEYNIQER 367


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 112 KRGNKKNQDLDDDFD 156
           KR +  N DLDDDFD
Sbjct: 219 KRDSSVNDDLDDDFD 233


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 76  TSVKKENHNMSKKRGNKKNQDLDDDFDE-KPSVMNEKTELTS 198
           TS K+   ++S+        + +DD DE  PSV  +K +LTS
Sbjct: 380 TSSKRNEDSLSESDFEPDIIEEEDDSDEFNPSVSRKKAKLTS 421


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 252 RXENIKKVPVSDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDN 386
           R   +KK+P  ++E+      ++     K  ++  D SDD+E +N
Sbjct: 90  RVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEVEN 134


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 333 GKSXKKGADRSDDEEDDNKSIINNTXNVSSK---PAKLAXXXXXXXXXXXXWSSEGS--- 494
           G+S    +++  DE    K  +NNT +VSSK   P K +              + GS   
Sbjct: 246 GESLPTVSNQEKDEGVIEKVAVNNTPSVSSKSPFPKKKSFSSMLAQVKKEKAENNGSDGY 305

Query: 495 DVXLKWLQMKMLQSLLVRRKLXIS 566
           D+     Q+++ QS+L +R   +S
Sbjct: 306 DLQPTKSQLELYQSILRKRANQVS 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,996
Number of Sequences: 5004
Number of extensions: 26623
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)