Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0710 - 26492093-26493460                                         29   3.0  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    29   3.0  
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475           29   3.0  
10_07_0196 + 13978647-13979142,13979242-13980542                       29   4.0  
02_05_0891 - 32554355-32555305                                         29   4.0  

>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +3

Query: 270 KVPVSDEEDVPKPAAKKSXXXG-----KSXKKGADRSDDEEDDNK 389
           K P  DE+D  K   K S         K  KK   +S DEEDD K
Sbjct: 182 KNPDDDEDDKKKSKKKSSDEDNDGAKKKKKKKSKGKSSDEEDDEK 226


>09_06_0048 +
           20477076-20478547,20478643-20478722,20478880-20478893,
           20480164-20481199,20481275-20481402,20481673-20481732,
           20481774-20481878,20481971-20482055,20482315-20482470,
           20482562-20482831,20482877-20483671,20483844-20483903,
           20484062-20485134
          Length = 1777

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 282 SDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           +DEE+    ++      G S +KG  RS    +D+ S++ ++   S+K
Sbjct: 580 NDEEEGNSDSSSVRHLEGNSKRKGRKRSKQAANDDSSVVKDSTRKSTK 627


>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
          Length = 345

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 VPVSDEEDVPKPAAKKSXXXGKSXKK 350
           +P+ DEED+P+P   K+    +S K+
Sbjct: 226 IPLDDEEDIPRPIGAKASKAQRSCKE 251


>10_07_0196 + 13978647-13979142,13979242-13980542
          Length = 598

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 282 SDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVS 419
           SD+  + +         G S   G   SD ++D NKS+ N+  N S
Sbjct: 484 SDDAKINQEGLIGGADFGSSPTHGESTSDQQDDGNKSVQNHKDNCS 529


>02_05_0891 - 32554355-32555305
          Length = 316

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 285 DEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDN 386
           +EED+ + +A KS    +  ++  D SD+EED++
Sbjct: 65  EEEDLVRSSATKSRDPPQENREEDDSSDEEEDES 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,096
Number of Sequences: 37544
Number of extensions: 158006
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)