Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   30   1.3  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_49603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)               28   7.2  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   7.2  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)                      28   7.2  
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     28   7.2  
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)                     27   9.5  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 276 PVSDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINN 404
           P +++E    P   +      S KKG+D++DD E + K+   N
Sbjct: 644 PEAEDEVTENPTKDEVVVEQSSPKKGSDKTDDSEKEGKTTDEN 686


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 285 DEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDD 383
           DEED  K A+ K      + KKG  + DDE+++
Sbjct: 840 DEEDDSKKASGKGKKGQDNKKKGKSKKDDEDEE 872


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 NIKKVPVSDEEDVPKPA-AKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKPAKL 437
           N+  VPV D    PKP+   +    GK+ K G+   D +   +K     T  +S K   L
Sbjct: 673 NMDTVPVIDPTPAPKPSYPSRPAGSGKAMKLGSKSKDVDSFVDKLRSEGTEVISHKQKSL 732

Query: 438 A 440
           A
Sbjct: 733 A 733


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 258 ENIKKVPVSDE--EDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNT 407
           ENI  +P ++E  E  PKP  +K+       K+   R  D++ D  ++ + +
Sbjct: 50  ENIPDLPANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKSALTDES 101


>SB_49603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 88  KENHNMSKKRGNKKNQDLDDDFDEKPSVMN 177
           KE +++ + +GNK+  DL++D   K   +N
Sbjct: 145 KEKYDLEEDKGNKEKYDLEEDKGNKEKFIN 174


>SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)
          Length = 847

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 300 PKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           P P+  +    G+  K+  D  DDEE++   +  +   V+++
Sbjct: 17  PGPSGLQQQQEGRGKKRSLDSDDDEEEEEDDVTYDLRQVTTR 58


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 285 DEEDVPKPAAKKSXXXGKSXKKGA---DRSDDEEDDNKSIINNTXNVSSKPAKL 437
           ++E  P+P+ K+S    K  +K A     S D+ED NK +      +   P K+
Sbjct: 568 EDEWKPEPSNKQSKPKRKYVRKSAPVESDSSDDEDSNKPLAVLQQEIKESPEKV 621


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 300 PKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           P P+  +    G+  K+  D  DDEE++   +  +   V+++
Sbjct: 179 PGPSGLQQQQEGRGKKRSLDSDDDEEEEEDDVTYDLRQVTTR 220


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 247 DSXKRT*R-KFQFQTKRTSRNRLPKSHXXXERVXKRVLIGQTMKRMITNPLSTI 405
           DS KR    + Q+Q  +T +  LPKS     +   + +  + +K ++ N  STI
Sbjct: 247 DSPKRPRSTELQYQGSKTEKKLLPKSAERSRQAKGKQITKEELKSLMENETSTI 300


>SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)
          Length = 567

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 106 SKKRGNKKNQDLDDDFDEK 162
           ++ RG K++ D DDD+DE+
Sbjct: 87  TRSRGKKRSHDSDDDYDEE 105


>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 318 KSXXXGKSXKKGADRSDDEEDDN 386
           K    G+  K+G D S++EEDDN
Sbjct: 27  KPKASGRKPKEGKDDSEEEEDDN 49


>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 285 DEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKP 428
           D+E + K   + +   G +   GA   +D+ED+ KS+I N       P
Sbjct: 140 DKESLQK---QNNLAQGGNNNSGAKEKEDKEDEVKSVIENFVQTQKSP 184


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 258 ENIKKVPVSDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDD 383
           +++  V  +D+E       KKS    K  K+G+ +S   E+D
Sbjct: 198 DDLTDVTSNDDESFISVGVKKSISGSKKSKRGSKKSKQREED 239


>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
          Length = 823

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 279 VSDEEDVPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKP 428
           +  E+ +PK    ++     S + GAD S   +  N S+ N    VS++P
Sbjct: 416 LKSEDPLPKETHPENGPDPASKRSGADLSIRRQISNASLTNYLRTVSNQP 465


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 76  TSVKKENHNMSKKRGNKKNQDLDDD 150
           T +K  + ++SKKRG  KN++L+++
Sbjct: 126 TPIKDTDTSISKKRGKVKNKELEEE 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,590
Number of Sequences: 59808
Number of extensions: 193258
Number of successful extensions: 1123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)