Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         29   0.16 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         29   0.16 
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   8.0  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSS 422
           +PKPA         S ++G + SDD + +  S  + + N S+
Sbjct: 422 IPKPAPSSETNGSSSQERGMESSDDAKSETSSTKDGSENGSN 463



 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 300 PKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKPAKL 437
           PKP  K +     +     +R  +  DD KS  ++T + S   + L
Sbjct: 419 PKPIPKPAPSSETNGSSSQERGMESSDDAKSETSSTKDGSENGSNL 464


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSS 422
           +PKPA         S ++G + SDD + +  S  + + N S+
Sbjct: 422 IPKPAPSSETNGSSSQERGMESSDDAKSETSSTKDGSENGSN 463



 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 300 PKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSKPAKL 437
           PKP  K +     +     +R  +  DD KS  ++T + S   + L
Sbjct: 419 PKPIPKPAPSSETNGSSSQERGMESSDDAKSETSSTKDGSENGSNL 464


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 339 SXKKGADR-SDDEEDDNKSIINNTXNVSSKPAKLA 440
           S    +DR ++D+ED+N S+      + S+ + L+
Sbjct: 250 SLDPNSDRLTEDDEDENISVTRTNSTIRSRSSSLS 284


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,134
Number of Sequences: 2352
Number of extensions: 6303
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)