Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase D...    32   1.5  
BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase D...    32   1.5  
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.                 32   1.5  
BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase D...    31   3.4  

>BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           VPKP  KK     +  +K  D SD+++DD+++    T   ++K
Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228


>BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           VPKP  KK     +  +K  D SD+++DD+++    T   ++K
Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228


>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
          Length = 1739

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425
           VPKP  KK     +  +K  D SD+++DD+++    T   ++K
Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228


>BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNK 389
           VPKP  KK     +  +K  D SD+++DD++
Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,033,241
Number of Sequences: 237096
Number of extensions: 840451
Number of successful extensions: 2502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)