BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060223.seq (631 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT007050-1|AAP35699.1| 501|Homo sapiens chromodomain helicase D... 32 1.5 BC007347-1|AAH07347.1| 501|Homo sapiens chromodomain helicase D... 32 1.5 AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. 32 1.5 BC020810-1|AAH20810.1| 501|Homo sapiens chromodomain helicase D... 31 3.4 >BT007050-1|AAP35699.1| 501|Homo sapiens chromodomain helicase DNA binding protein 2 protein. Length = 501 Score = 32.3 bits (70), Expect = 1.5 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425 VPKP KK + +K D SD+++DD+++ T ++K Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228 >BC007347-1|AAH07347.1| 501|Homo sapiens chromodomain helicase DNA binding protein 2 protein. Length = 501 Score = 32.3 bits (70), Expect = 1.5 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425 VPKP KK + +K D SD+++DD+++ T ++K Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228 >AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. Length = 1739 Score = 32.3 bits (70), Expect = 1.5 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNKSIINNTXNVSSK 425 VPKP KK + +K D SD+++DD+++ T ++K Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228 >BC020810-1|AAH20810.1| 501|Homo sapiens chromodomain helicase DNA binding protein 2 protein. Length = 501 Score = 31.1 bits (67), Expect = 3.4 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 297 VPKPAAKKSXXXGKSXKKGADRSDDEEDDNK 389 VPKP KK + +K D SD+++DD++ Sbjct: 186 VPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 58,033,241 Number of Sequences: 237096 Number of extensions: 840451 Number of successful extensions: 2502 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2489 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 6860268620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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