Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060223.seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  ENHNMSKKRGNKKNQDLDDDFDEKPSVMNEKTE 189
           +N N +K+ GN++N +  +D  +  +  N+  +
Sbjct: 448 DNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQ 480


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 345 KKGADRSDDEEDDNKSI 395
           K+  D  DD+E DN++I
Sbjct: 82  KEETDDKDDDESDNENI 98


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 253 RYRYNLQFYSSSCLFLYF 200
           +Y YN   Y+++C  LY+
Sbjct: 97  KYNYNNNNYNNNCKKLYY 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 253 RYRYNLQFYSSSCLFLYF 200
           +Y YN   Y+++C  LY+
Sbjct: 97  KYNYNNNNYNNNCKKLYY 114


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 253 RYRYNLQFYSSSCLFLYF 200
           +Y YN   Y+++C  LY+
Sbjct: 97  KYNYNNNNYNNNCKKLYY 114


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 253 RYRYNLQFYSSSCLFLYF 200
           +Y YN   Y+++C  LY+
Sbjct: 97  KYNYNNNNYNNNCKKLYY 114


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 530 AKPVGKKKTXN*RKIIEAQSSDEDDDP 610
           AK   KKK  + +K+I ++S  + + P
Sbjct: 334 AKKKSKKKESDDKKVISSKSGSKANSP 360


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 136 LDFFCFLSFS 107
           LDFF FLSF+
Sbjct: 276 LDFFVFLSFA 285


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 121 FLSFSTYYGFLF*QKYCLXKLN 56
           F+   TY  FL    YC  +LN
Sbjct: 100 FMGMRTYEDFLSVAVYCRDRLN 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,475
Number of Sequences: 438
Number of extensions: 1870
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)