Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    24   0.96 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.9  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 218 MYHTTFQRHTTSTKFYYVFVSS*TSPKTRRIAKQCSRHFT 99
           +YH    R    T      V+    PK + I K C+R FT
Sbjct: 51  LYHKLQFRGPPRTPLQPKLVAGKLKPKRQFICKYCNRQFT 90


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 216 VPYDLSTSYDQHEILLCV 163
           +P+   T YD+ E+LL +
Sbjct: 54  IPFLTETIYDEDEVLLAL 71


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -1

Query: 501 DVGGLFNASLMRRQYSSSLSAFGSCIQKKHFFEN 400
           ++    N S  + ++ + +    S +QKKH  +N
Sbjct: 63  EINAFANVSPSKTKFFNLIKRKDSPVQKKHILKN 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,186
Number of Sequences: 336
Number of extensions: 3125
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)