Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    80   2e-16
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    66   3e-12
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   4.2  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   5.5  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    26   5.5  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
 Frame = +2

Query: 227 KEGALVCLPREDSLMHFCWKDRT--TGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXX 400
           ++G +      D L+HF WK+R   + EVEDD +IFP++ EF +++ECTTGRVY      
Sbjct: 42  RKGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPEEAEFIKIDECTTGRVYALKFKS 101

Query: 401 XXXXXXXWMQEPKADKDEEYCRRINEALNNP 493
                  WMQE   +KD+E    IN+ + +P
Sbjct: 102 SSQIHFYWMQEYSDEKDKETASLINQLIADP 132


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 266 LMHFCWKDRTTGE-VEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKA 442
           L+HF W  R   E  EDD+++F  +C F +V ECTTGR Y+            WMQE   
Sbjct: 38  LIHFQWAKRNDLENPEDDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASD 97

Query: 443 DKDEEYCRRINEALNN 490
           D D  Y  RIN  + +
Sbjct: 98  DNDTSYAERINSYIKD 113


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 534 LPTTTASSTPPDVGGLFNASLMRRQYSSSLSAFGSCIQK 418
           LPT    S  P++  ++   L R   S +L  FG C+QK
Sbjct: 288 LPTKNLLSKFPNLASVY-IPLTRALKSGNLGEFGKCLQK 325


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 451 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 308
           +LV  WL +PE   +++ LE  Y N     F+   K   IR  ++ +L
Sbjct: 392 VLVDKWLENPETLEVKEVLEKRYAN--LNIFVGCDKMDPIRGIREKLL 437


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 361 FIHTRKFTIIRKYKQVILNLPRSSVFPTKVHERIFS 254
           ++  RK   +RK++     +P  S  P KV   IFS
Sbjct: 4   YVKPRKNEFLRKFENFYFEIPFLSKLPPKVSVPIFS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,695
Number of Sequences: 5004
Number of extensions: 51725
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)