Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060222.seq
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 55 6e-08
09_02_0076 - 3959572-3960279 30 1.9
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 29 2.5
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 29 2.5
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 29 3.3
08_02_0073 + 11919938-11920060,11922325-11922939 29 4.3
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 29 4.3
01_06_1806 + 40012952-40016836 29 4.3
01_01_0996 - 7879154-7880117,7881280-7881395 29 4.3
06_03_0319 + 19537529-19538056 28 7.5
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 28 7.5
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 27 9.9
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 314 DLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 493
D ++FP++ F +V + ++GRVY+ WMQEP AD D + CR++N +N P
Sbjct: 40 DQIVFPEEAVFEKVTQ-SSGRVYILKFRHDSRKFFFWMQEPSADDDSQICRQVNAYINRP 98
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +3
Query: 174 EFRAGRMTLKGRMVHPDKRKGLLYVYQEKIL---SCTFVGKTELRGRL 308
EFRAG+M+L G V PD RKGL+ + +++I+ F T+ GR+
Sbjct: 13 EFRAGKMSLDGTRVIPDTRKGLVRIGRDQIVFPEEAVFEKVTQSSGRV 60
>09_02_0076 - 3959572-3960279
Length = 235
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = -3
Query: 418 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 290
EA+L++ + +++NS F+ TRK T+++KYK +V+++ PR+S
Sbjct: 49 EAMLQQARD-QFLNS----FMQTRKGTLVQKYKIKVVVDDPRTS 87
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 612 PLDQHXQIMH*LLXRHIVE*ITYFTILPTTTASST 508
PLD H I++ +L +HI E Y I+ TTA T
Sbjct: 319 PLDLHFSILYNVLKKHIAEDADYKVIVFCTTAMVT 353
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 612 PLDQHXQIMH*LLXRHIVE*ITYFTILPTTTASST 508
PLD H I++ +L +H+ E Y I+ TTA T
Sbjct: 251 PLDLHFSILYDVLKKHVAEDADYKVIIFCTTAMVT 285
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 116 TVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQK 229
TVW W W +F ++ R W ++ SY +R++
Sbjct: 666 TVWARHWYWKRFAPQEQLKRSERWKDSIDFSYVRARRR 703
>08_02_0073 + 11919938-11920060,11922325-11922939
Length = 245
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -3
Query: 451 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 308
+L++L L PE+ + + + N +F TRK T+++KYK ++
Sbjct: 74 VLITLDKLTPEQQKDLEAMMQQARNQFLSSFTETRKGTLVQKYKVKVI 121
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 412 LLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLP 299
L+R+Q + + +NS F+ TRK T+++KYK +++ ++P
Sbjct: 671 LMRQQTQHQLLNS----FMETRKGTVVQKYKVKLVADVP 705
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -1
Query: 552 ITYFTILPTTTASSTPPDVGGLFNASLM---RRQYSSSLSA-FGSCIQKKHFFENNLNLS 385
+T +I + + S PPD+G L N L+ ++ S+ A FG+ HF + NL+
Sbjct: 163 LTKLSISMNSISGSLPPDLGSLKNLELLDIKMNTFNGSIPATFGNLSCLLHFDASQNNLT 222
Query: 384 T*TRPVVHSFTRV 346
P + S T +
Sbjct: 223 GSIFPGITSLTNL 235
>01_01_0996 - 7879154-7880117,7881280-7881395
Length = 359
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 224 VWMYHTTFQRHTTSTKFYYVFVSS*TSPKTRRIAKQC 114
+W +H T R+ ++ + + SS T P RRIA C
Sbjct: 15 LWEFHATGPRNISNPSWRDLIRSSWTDPNYRRIAVSC 51
>06_03_0319 + 19537529-19538056
Length = 175
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -3
Query: 409 LRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 290
+ +Q +++NS F+ TRK T+++KYK +V+ + PR+S
Sbjct: 53 MMQQARDQFLNS----FMQTRKGTLVQKYKVKVVADDPRTS 89
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 245 CLPREDSLMHFCWKDRTTGEVEDDLL 322
C+P + L+ + +++TG+VED++L
Sbjct: 44 CVPFREQLLEYYANNKSTGDVEDNML 69
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 27.5 bits (58), Expect = 9.9
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Frame = +2
Query: 29 KLFQTVYCKGLKYFKGSQ*HCIS**NVYCTVWQYVWSWGKFRRKQTHSRISCWSYDVERS 208
KL+ TV GL + GS+ +Y T Y+ K R+ T + S ++
Sbjct: 282 KLYMTVLPDGLYGYVGSKPP-----QLYYT---YLVDTNKSRKDPTRVTFTNGSLNIFLQ 333
Query: 209 YGTSRQKEGALVCLPREDSLMH-----------FCWKDRTTGEVEDDLLIFPDDCEFTRV 355
T K A++ LP S+ + + W D V D + +PDDC F
Sbjct: 334 -STQAGKPEAIIALPEAKSIQYIRLEYDGHLRLYEWSDEKWTMVSDVIKKYPDDCAFPTC 392
Query: 356 NECTTGRVYV 385
E +TG V V
Sbjct: 393 AE-STGYVQV 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,954
Number of Sequences: 37544
Number of extensions: 324353
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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