Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)                      136   1e-32
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.7  

>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
          Length = 401

 Score =  136 bits (329), Expect = 1e-32
 Identities = 57/97 (58%), Positives = 70/97 (72%)
 Frame = +2

Query: 215 TSRQKEGALVCLPREDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXX 394
           T+ +++G +     EDSLMHFCWKDRT+G+VEDDL+IFPDD E+ RV +CTTGRVY+   
Sbjct: 33  TADKRKGQVYIHQSEDSLMHFCWKDRTSGKVEDDLIIFPDDIEYKRVKQCTTGRVYILKF 92

Query: 395 XXXXXXXXXWMQEPKADKDEEYCRRINEALNNPPTSG 505
                    WMQEPK DKDEEYC ++N  LNNPPT G
Sbjct: 93  KSSSRKFFFWMQEPKTDKDEEYCTKVNSLLNNPPTPG 129



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/75 (36%), Positives = 41/75 (54%)
 Frame = +3

Query: 105 MSTALFGNTXXXXXXXXXNKHIVEFRAGRMTLKGRMVHPDKRKGLLYVYQEKILSCTFVG 284
           M+ +LFG T         +K+++EFRAG+M LKG  V  DKRKG +Y++Q +     F  
Sbjct: 1   MAASLFGPTARSS-----SKNLLEFRAGKMNLKGTTVTADKRKGQVYIHQSEDSLMHFCW 55

Query: 285 KTELRGRLRMTCLYF 329
           K    G++    + F
Sbjct: 56  KDRTSGKVEDDLIIF 70


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 179  SCWSYDVERSYGTSRQKEGALVCLPREDSL 268
            +CW  D +       +KEG+ +  P++DSL
Sbjct: 1853 TCWCVDSQGKEKPGTRKEGSKITCPKDDSL 1882


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,616,872
Number of Sequences: 59808
Number of extensions: 392424
Number of successful extensions: 1032
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)