Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    93   2e-19
Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 46/115 (40%), Positives = 62/115 (53%)
 Frame = +2

Query: 158 KQTHSRISCWSYDVERSYGTSRQKEGALVCLPREDSLMHFCWKDRTTGEVEDDLLIFPDD 337
           K   SR+   S D  R    +  K+G +      D L+HFCWKDR TG V DDL+IFPDD
Sbjct: 22  KAGRSRLEAGSGDTMRKV-VAEPKKGLVFIKQSNDMLIHFCWKDRETGAVVDDLIIFPDD 80

Query: 338 CEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNPPTS 502
            EF  V  C  G+VY+            W+Q+   D D++  +++ +ALN PPTS
Sbjct: 81  AEFKAVPGCPDGKVYM-LKFKSGDMKLFWIQDSTPDVDKDLVKKVTDALNKPPTS 134



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 114 ALFGNTXXXXXXXXXNKHIVEFRAGRMTLKG------RMVHPDKRKGLLYVYQEKILSCT 275
           A+F NT         + HIVEF+AGR  L+       R V  + +KGL+++ Q   +   
Sbjct: 3   AMFSNTRSVASS---SGHIVEFKAGRSRLEAGSGDTMRKVVAEPKKGLVFIKQSNDMLIH 59

Query: 276 FVGKTELRG 302
           F  K    G
Sbjct: 60  FCWKDRETG 68


>Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical
           protein F10B5.9 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 550 YVFHDLAHHYCFLHPTRCRRIV*CFINAPTVFFILV 443
           Y F  + +HY  L  T   R V  F+N P + F ++
Sbjct: 86  YTFVSIGYHYASLSSTWEDRTVNIFMNGPLLLFFII 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,203
Number of Sequences: 27780
Number of extensions: 293583
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)