Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
 Frame = -3

Query: 643 PIVPKREVXXPTGPTXPNNALAVXETYC*VNYVFHDLAHHYCFL--------HPTRCRRI 488
           P+  KRE   PTG T   N + V  T C  N   H   +  C          HP R  + 
Sbjct: 404 PVTQKREGGPPTGATTGPNEI-VTCTNCGPNPCTHTTTNG-CTAELRKKEPPHPIRVAKT 461

Query: 487 V*CF--INAPTVFFILVSLWLLH 425
           +     I  P  +F+ ++ + +H
Sbjct: 462 IDVIARITFPVAYFMFLTFFFIH 484


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
 Frame = -3

Query: 643 PIVPKREVXXPTGPTXPNNALAVXETYC*VNYVFHDLAHHYCFL--------HPTRCRRI 488
           P+  KRE   PTG T   N + V  T C  N   H   +  C          HP R  + 
Sbjct: 424 PVTQKREGGPPTGATTGPNEI-VTCTNCGPNPCTHTTTNG-CTAELRKKEPPHPIRVAKT 481

Query: 487 V*CF--INAPTVFFILVSLWLLH 425
           +     I  P  +F+ ++ + +H
Sbjct: 482 IDVIARITFPVAYFMFLTFFFIH 504


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
 Frame = -3

Query: 643 PIVPKREVXXPTGPTXPNNALAVXETYC*VNYVFHDLAHHYCFL--------HPTRCRRI 488
           P+  KRE   PTG T   N + V  T C  N   H   +  C          HP R  + 
Sbjct: 373 PVTQKREGGPPTGATTGPNEI-VTCTNCGPNPCTHTTTNG-CTAELRKKEPPHPIRVAKT 430

Query: 487 V*CF--INAPTVFFILVSLWLLH 425
           +     I  P  +F+ ++ + +H
Sbjct: 431 IDVIARITFPVAYFMFLTFFFIH 453


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 580 AVXETYC*VNYVFHDLAHHY 521
           AV +T C  NYV  D  H Y
Sbjct: 529 AVKDTXCDPNYVVPDSEHGY 548


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 149 TSPKTRRIAKQCSRHFTMICSVTVNP 72
           TSP T   +     H    CSVT +P
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,559
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)