Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060222.seq
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26590.1 68415.m03190 adhesion regulating molecule family sim...    76   2e-14
At4g20190.1 68417.m02952 hypothetical protein                          31   0.51 
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    31   0.89 
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ...    30   1.6  
At4g18930.1 68417.m02790 cyclic phosphodiesterase identical to c...    29   2.1  
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    29   3.6  
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas...    29   3.6  
At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    28   4.8  
At1g17850.1 68414.m02209 expressed protein                             28   4.8  
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ...    27   8.3  

>At2g26590.1 68415.m03190 adhesion regulating molecule family
           similar to oocyte membrane protein (GI:6174842) [Xenopus
           laevis]; similar to Adhesion regulating molecule 1
           precursor (110 kDa cell membrane glycoprotein) (Gp110)
           (Swiss-Prot:Q16186) [Homo sapiens]; contains Pfam
           PF04683: Adhesion regulating molecule conserved region
          Length = 300

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = +2

Query: 257 EDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEP 436
           ++ L+HF W DR    VEDD ++FPD+  F +VN+ ++ RVY+            WMQEP
Sbjct: 44  DEGLIHFQWLDRNQNTVEDDQIVFPDEALFEKVNQ-SSDRVYILKFNSDDRKLFFWMQEP 102

Query: 437 KADKDEEYCRRINEALNNPPTSGGVE 514
           +A+ D E C  +N+ LN P    G E
Sbjct: 103 RAEGDAELCSSVNQYLNQPLEFPGEE 128



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 168 IVEFRAGRMTLKGRMVHPDKRKGLLYV 248
           ++EFRAG+M+L+G  V PD RKGL+ +
Sbjct: 14  MLEFRAGKMSLQGTRVVPDARKGLVRI 40


>At4g20190.1 68417.m02952 hypothetical protein 
          Length = 389

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 PREDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGR 376
           PR  S+ +  WKDRTT +V D +L+      F R   C  GR
Sbjct: 96  PRNSSIHN--WKDRTTEQVLDLMLVQDAATAFRRSKSCGEGR 135


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 609 LDQHXQIMH*LLXRHIVE*ITYFTILPTTTASST 508
           LD+H  ++H LL  HI + + Y  I+  TTA  T
Sbjct: 620 LDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVT 653


>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 720

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -1

Query: 279 QKCMRESSLGKHTRAPSFCLDVPYDLSTSYDQHEILLCVCFLLNFPQDQTYCQTV 115
           QKC +   + K   + +FCL  P D  T     + +L  C  + F     Y Q +
Sbjct: 541 QKCYKPDQIMKFFLSSTFCLQPPGDSYTRRSTFDSILAGCIPVFFHPGSAYAQYI 595


>At4g18930.1 68417.m02790 cyclic phosphodiesterase identical to
           cyclic phosphodiesterase [Arabidopsis thaliana]
           gi|2065013|emb|CAA72363
          Length = 181

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 215 YHTTFQRHTTSTKFYY-VFVSS*TSPKTRRIAKQCSRHFTMICSVTVNP*STLTLYSKLF 39
           Y  T  R +T T F+  VF+   T+P+     + C  HF    +    P  +L LY++L 
Sbjct: 70  YTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL-LYAELT 128

Query: 38  E 36
           E
Sbjct: 129 E 129


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 609 LDQHXQIMH*LLXRHIVE*ITYFTILPTTTASST 508
           LD+H  +++ LL +HI + + Y  I+  TTA  T
Sbjct: 318 LDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVT 351


>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 847

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 261 SSLGKHTRAPSFCLDVPYDLSTSYDQHEILLCVCFLLNFPQD 136
           +SL +  +  S  +   +DLS    +HE+ LC  +   FP+D
Sbjct: 389 ASLWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPED 430


>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 218 SRQKEGALVCLPREDSLMHFCWKDRTTGEVE--DDLLIFPDDCEFTRVNECT 367
           S  KE  + C   E SL   C  +   G VE  D +L  P+DC+F R    T
Sbjct: 317 SESKEKMIWCA--EISLQKKCNNEEIWGTVEWFDAVLTVPEDCKFVRAIAAT 366


>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 107 VYCTVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQKE 232
           ++C +W Y W  G FR       + C+      S+G S +KE
Sbjct: 194 IWCEIWCYEWDVGHFRGAH-RPEVDCFR---NTSFGLSDEKE 231


>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
           (SPL12) identical to squamosa promoter binding
           protein-like 12 [Arabidopsis thaliana] GI:6006395;
           contains Pfam profiles PF03110: SBP domain, PF00023:
           Ankyrin repeat
          Length = 927

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 72  RVHSDTAYHSKMSTALFGNTXXXXXXXXXNKHIV-EFRAGRMTLKGRMVHPDKRK 233
           R H     HSK +TAL G             H++ EF  G+ + + R+   +KR+
Sbjct: 144 RRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRR 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,816
Number of Sequences: 28952
Number of extensions: 265124
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)