Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060221.seq
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...    77   3e-13
UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D000...    36   0.64 

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 32/34 (94%), Positives = 32/34 (94%)
 Frame = +3

Query: 255 TEEPPRLPRRKIRXNXYSNAFGNYNGGYWSDDQG 356
           TEEPPRLPRRKIR N YSNAFGNYNGGYWSDDQG
Sbjct: 23  TEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQG 56



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +2

Query: 425 VWGLYPIKNPFGRGFGPDGPAMRRPNRVRELK 520
           ++G  P +NPFGRGFGPDGPAMRRPNRV  +K
Sbjct: 79  MFGPLPNQNPFGRGFGPDGPAMRRPNRVERVK 110



 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 190 MSIPFYKMNSREEYEMNEDCG 252
           MSIPFYKMNSREEYEMNEDCG
Sbjct: 1   MSIPFYKMNSREEYEMNEDCG 21



 Score = 41.1 bits (92), Expect = 0.022
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 430 GPLPHQKPIRKRXWSGWAXYAXT*QSERVKRYLMRVXXQXTV*XTFPENIAPN-RAEYXG 606
           GPLP+Q P  +             + ERVKRYLMR           P  I      EY G
Sbjct: 81  GPLPNQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCG 140

Query: 607 VWAPXIGSFGMAR 645
           V A  + SFGM+R
Sbjct: 141 VCALELDSFGMSR 153


>UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D0005;
           n=5; Pezizomycotina|Rep: Part of an hypothetical protein
           Pa5D0005 - Podospora anserina
          Length = 154

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 428 KHWSWSWSKHEVRRGSW 378
           +HW W W+ H+VRRG W
Sbjct: 118 QHWQWRWNVHKVRRGDW 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,563,866
Number of Sequences: 1657284
Number of extensions: 10792778
Number of successful extensions: 24296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24266
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)