Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060221.seq
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    24   1.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    24   1.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.8  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -1

Query: 238 SFHIL---HGCSF-CRTEYS*C*NRYWNVYELFQSIQ--RYYRFFSILNEYFTI 95
           +FH++   HG S+ C  +Y  C N   +    F  +     +R F+ILN Y TI
Sbjct: 140 TFHLIYEAHGFSYKCGIQYHIC-NTVISATVCFMMLLMLEIWRRFTILNNYLTI 192


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 350 VVRPISPIVISKCIAVXVXPYLSSRK 273
           V++  + ++I  C+A+ + PY   R+
Sbjct: 121 VMKNFAILIIPTCVAMFIVPYFQDRR 146


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -1

Query: 238 SFHIL---HGCSF-CRTEYS*C*NRYWNVYELFQSIQ--RYYRFFSILNEYFTI 95
           +FH++   HG S+ C  +Y  C N   +    F  +     +R F+ILN Y TI
Sbjct: 136 TFHLIYEAHGFSYKCGIQYHIC-NTVISATVCFMMLLMLEIWRRFTILNNYLTI 188


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 525 ISFNSLTLLGLRIAGPSGPXPLPNGFLMG*RPQTL 421
           ++F  L  + +++ G   P P+ +    G RP  L
Sbjct: 136 VNFMKLDEIEVKVTGNDAPPPITSFETSGLRPHLL 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,855
Number of Sequences: 336
Number of extensions: 2909
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)