Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060221.seq
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   9.5  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 396 SSEGXLVDDQTVQDLGRQTNIPHCNFQMHCC 304
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 SIMSIPFYKMNSREEYEMNED 246
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 337  IGLTTKVLDRLIIHQXPLRTSCLDQDQDQCLGPLP 441
            + L  K     +IH+ P  T C  +  D  L  +P
Sbjct: 1506 VSLVEKACSETVIHEIPGITRCFSKPPDSALDTVP 1540


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 162 MNCFNLYNVITDFFQY*MSTLQFRSLNKN 76
           +NC++L NV+ ++       L F+ +N+N
Sbjct: 415 LNCYSLLNVLANYVVVFKDRLIFQEINQN 443


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 202 FYKMNSREEYEMNEDCG*LKSHLD 273
           FY+  S+   E N D G LK+HLD
Sbjct: 726 FYERLSKLLEEENSDLGELKNHLD 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,483
Number of Sequences: 5004
Number of extensions: 46643
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)